pycom12g16910

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
19210124 .. 19211054
931 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGTTTCCGCATTGTGTAGGGTCGGTTGAATTGGCAGCAGTTGGGGTGTCAGCTTCAGTATTCAACTTAGTTTCTAAATTGTTTAACGTTCCATTGCTCAACATCACTACATCTTTTGTTGCTGAAGAGCAGGCATTGGCTAGCAAGGCCGAGGATGATTTTCAGGGTGACAGGCAGAGCAAGAAGCTCCTTCCCTCGGTGTCAACGGCATTGGCTCTTGCTGCCACCTTTGGCGTAGCTGAAGCTGTTGCACTTTTTCTTGGGTCGGGTGTCTTGATGAATGCCATGCTGATTCACCAATGCGAATACCTGCTGAGAGTTTTCTTGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

11.66

Weight (kDa)

5.14

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 318
AciI CCGC 1 cut(s) 8
AclI AACGTT 1 cut(s) 87
AcuI CTGAAG 3 cut(s) 39, 144, 261
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 29, 64
AluBI AGCT 4 cut(s) 53, 187, 239, 245
AluI AGCT 4 cut(s) 53, 187, 239, 245
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 35, 221
AsuHPI GGTGA 2 cut(s) 179, 287
AsuNHI GCTAGC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 47, 208
BceAI ACGGC 1 cut(s) 222
BfaI CTAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 318
BisI GCNGC 2 cut(s) 36, 222
BlsI GCNGC 2 cut(s) 37, 223
BmtI GCTAGC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 150, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 150, 195
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 47, 208
BshFI GGCC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 1 cut(s) 149
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 306
BspMI ACCTGC 1 cut(s) 318
BspOI GCTAGC 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 150, 195
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 132, 142
BstDEI CTNAG 2 cut(s) 67, 314
BstF5I GGATG 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 146, 221
BstV1I GCAGC 2 cut(s) 47, 208
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 160
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 132, 142
CviAII CATG 1 cut(s) 286
CviJI RGCY 7 cut(s) 53, 140, 149, 187, 215, 239, 245
CviKI_1 RGCY 7 cut(s) 53, 140, 149, 187, 215, 239, 245
DdeI CTNAG 2 cut(s) 67, 314
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 39, 144, 261
FaeI CATG 1 cut(s) 289
FaiI YATR 1 cut(s) 287
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 36, 222
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 36, 222
FspBI CTAG 1 cut(s) 141
GluI GCNGC 2 cut(s) 36, 222
HaeIII GGCC 1 cut(s) 149
Hin1II CATG 1 cut(s) 289
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 1 cut(s) 292
HphI GGTGA 2 cut(s) 179, 287
Hpy166II GTNNAC 1 cut(s) 204
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 221
HpyF3I CTNAG 2 cut(s) 67, 314
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 1 cut(s) 289
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 4 cut(s) 116, 149, 157, 323
Lsp1109I GCAGC 2 cut(s) 47, 208
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 167
MboII GAAGA 1 cut(s) 137
MluCI AATT 2 cut(s) 29, 77
MnlI CCTC 2 cut(s) 145, 205
MseI TTAA 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 146, 221
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 1 cut(s) 289
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 37, 223
Psp1406I AACGTT 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 36, 222
SetI ASST 7 cut(s) 55, 90, 189, 230, 241, 247, 312
Sse9I AATT 2 cut(s) 29, 77
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 141
TaiI ACGT 1 cut(s) 90
TasI AATT 2 cut(s) 29, 77
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 2 cut(s) 35, 221
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 293
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.