pycom12g17480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
19832831 .. 19835288
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
ATGTACAAAAAAAAAAAAAAAAAAGGGCTTACAAGGTATAGCCAGGTCCACTTTTTCCTTCACATTTCTGCCCGGCGACGGCCTCATCTGCAGCCTCTCCAGCTTCAGAAGATCGAGTTAAAGTTTCAGAGCGATAGAATCTACAAGATGGAGGGAACTGGAAGGAGATCGAGATTCACACTCCTGCTTCTTCCTCTGTTGATTTCTCTGTCAATTCCCTGCATATCTGCCACTTACAAGCCAGGCGACATCGTCTCCATGAGCAAGATGGGTCTTTATCACTCTATGAAAACCGAATGGCATGATATGATCGGTCGACATTGCCCAATATTTGCTGTCAATCGTGAGGTGTTAGTTCCTATAGCGAAGCCAATGGGTTATACAGGAGCTGATGCTTATAAGATATCATTTCAAGTTGGGAGAGAAAAGTTTTTAATACCGTGGCTTTTTGTGATAAATCGTAAAAGTTCTGAGGTCCCAATGATTGATGTCCATTTGAGGTACTCGGGAAGTGATCTGCATGGTGTCACTGCTAAAGTTGTGGATATGCCTCACCACTGTACTCTTGGGCTTTCGGATTTGCACGTTGTGAAATGTGACATAATCTTGTCGTATGCACGCAGGGAGGAGCAATCAGAGATAGACGTGACTTCTGGATTTTATGTACTGTTTGGATCAGGTCTCATGCTTTCTTTTATTCTGTCGATATACATCTTGCAATCATCACGGGACAAGTTAGCAAGGTTCGTGAGGGAGAGAGTTGCAGAAAGCAACATGCCTGCTGGAGGTTTGGCAAAGGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.65

Weight (kDa)

9.77

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AccI GTMKAC 1 cut(s) 316
AclWI GGATC 1 cut(s) 682
AcuI CTGAAG 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 589
AfaI GTAC 4 cut(s) 5, 503, 562, 666
AfiI CCNNNNNNNGG 2 cut(s) 78, 785
AgsI TTSAA 2 cut(s) 413, 803
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 2 cut(s) 42, 241
AluBI AGCT 2 cut(s) 103, 389
AluI AGCT 2 cut(s) 103, 389
Alw26I GTCTC 2 cut(s) 259, 686
AlwI GGATC 1 cut(s) 682
AlwNI CAGNNNCTG 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 46, 475
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 2 cut(s) 46, 475
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 142, 262
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 44, 243
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 259, 686
BfmI CTRYAG 2 cut(s) 89, 360
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 3 cut(s) 44, 73, 243
Bme18I GGWCC 2 cut(s) 46, 475
BmeT110I CYCGRG 1 cut(s) 505
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 46, 475
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 3 cut(s) 44, 73, 243
BmsI GCATC 1 cut(s) 382
BpmI CTGGAG 2 cut(s) 83, 804
BpuMI CCSGG 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 710
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 785
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 319
Bse8I GATNNNNATC 1 cut(s) 710
BseBI CCWGG 2 cut(s) 44, 243
BseDI CCNNGG 1 cut(s) 440
BseJI GATNNNNATC 1 cut(s) 710
BseLI CCNNNNNNNGG 2 cut(s) 78, 785
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 641
BseXI GCAGC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 2 cut(s) 461, 743
BslI CCNNNNNNNGG 2 cut(s) 78, 785
BsmAI GTCTC 2 cut(s) 259, 686
BsmBI CGTCTC 1 cut(s) 259
BsmFI GGGAC 2 cut(s) 461, 743
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 686
BsoBI CYCGRG 1 cut(s) 505
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 111, 167, 309, 514, 674
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 93
BspPI GGATC 1 cut(s) 682
BspTNI GGTCTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 5 cut(s) 111, 167, 309, 514, 674
Bst2UI CCWGG 2 cut(s) 44, 243
Bst4CI ACNGT 3 cut(s) 441, 560, 669
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 619, 780
BstDEI CTNAG 1 cut(s) 471
BstDSI CCRYGG 1 cut(s) 440
BstENI CCTNNNNNAGG 1 cut(s) 783
BstKTI GATC 5 cut(s) 114, 170, 312, 517, 677
BstMAI GTCTC 2 cut(s) 259, 686
BstMBI GATC 5 cut(s) 111, 167, 309, 514, 674
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 88, 100
BstNI CCWGG 2 cut(s) 44, 243
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 3 cut(s) 42, 71, 241
BstSFI CTRYAG 2 cut(s) 89, 360
BstV1I GCAGC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 440
BtrI CACGTC 1 cut(s) 646
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 528, 556
Cac8I GCNNGC 2 cut(s) 619, 780
CaiI CAGNNNCTG 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 46, 475
Csp6I GTAC 4 cut(s) 4, 502, 561, 665
CviAII CATG 5 cut(s) 259, 302, 521, 685, 775
CviQI GTAC 4 cut(s) 4, 502, 561, 665
DdeI CTNAG 1 cut(s) 471
DpnI GATC 5 cut(s) 113, 169, 311, 516, 676
DpnII GATC 5 cut(s) 111, 167, 309, 514, 674
DraIII CACNNNGTG 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 686
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 46, 475
Eco57I CTGAAG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 505
EcoNI CCTNNNNNAGG 1 cut(s) 783
EcoO109I RGGNCCY 1 cut(s) 475
EcoRII CCWGG 2 cut(s) 42, 241
EcoRV GATATC 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 5 cut(s) 262, 305, 524, 688, 778
FaqI GGGAC 2 cut(s) 461, 743
FatI CATG 5 cut(s) 258, 301, 520, 684, 774
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
GsuI CTGGAG 2 cut(s) 83, 804
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 73
Hin1II CATG 5 cut(s) 262, 305, 524, 688, 778
HincII GTYRAC 1 cut(s) 317
HindII GTYRAC 1 cut(s) 317
HinfI GANTC 2 cut(s) 138, 174
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 2 cut(s) 49, 317
Hpy188I TCNGA 5 cut(s) 108, 129, 472, 577, 637
Hpy188III TCNNGA 5 cut(s) 171, 344, 507, 654, 748
Hpy8I GTNNAC 2 cut(s) 49, 317
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 2 cut(s) 68, 156
HpyCH4III ACNGT 3 cut(s) 441, 560, 669
HpyCH4IV ACGT 2 cut(s) 585, 645
HpyCH4V TGCA 7 cut(s) 91, 222, 520, 583, 617, 718, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 100
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 2 cut(s) 585, 645
Hsp92II CATG 5 cut(s) 262, 305, 524, 688, 778
Kzo9I GATC 5 cut(s) 111, 167, 309, 514, 674
LmnI GCTCC 2 cut(s) 386, 628
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 382
MaeII ACGT 2 cut(s) 585, 645
MaeIII GTNAC 3 cut(s) 526, 596, 646
MalI GATC 5 cut(s) 113, 169, 311, 516, 676
MboI GATC 5 cut(s) 111, 167, 309, 514, 674
MboII GAAGA 2 cut(s) 121, 182
MluCI AATT 1 cut(s) 213
MseI TTAA 2 cut(s) 119, 434
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 3 cut(s) 44, 73, 243
MvaI CCWGG 2 cut(s) 44, 243
MwoI GCNNNNNNNGC 2 cut(s) 88, 100
NciI CCSGG 1 cut(s) 73
NdeII GATC 5 cut(s) 111, 167, 309, 514, 674
NlaIII CATG 5 cut(s) 262, 305, 524, 688, 778
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 3 cut(s) 526, 596, 646
NspI RCATGY 1 cut(s) 778
PfeI GAWTC 2 cut(s) 138, 174
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 93
PpuMI RGGWCCY 1 cut(s) 475
PsiI TTATAA 1 cut(s) 399
Psp5II RGGWCCY 1 cut(s) 475
Psp6I CCWGG 2 cut(s) 42, 241
PspGI CCWGG 2 cut(s) 42, 241
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 2 cut(s) 46, 475
PspPPI RGGWCCY 1 cut(s) 475
PstI CTGCAG 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 389
PsyI GACNNNGTC 1 cut(s) 251
RsaI GTAC 4 cut(s) 5, 503, 562, 666
RsaNI GTAC 4 cut(s) 4, 502, 561, 665
SalI GTCGAC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 119, 434
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 5 cut(s) 111, 167, 309, 514, 674
Sau96I GGNCC 2 cut(s) 46, 475
ScrFI CCNGG 3 cut(s) 44, 73, 243
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 2 cut(s) 89, 360
SinI GGWCC 2 cut(s) 46, 475
Sse9I AATT 1 cut(s) 213
SspI AATATT 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 42, 71, 241
TaaI ACNGT 3 cut(s) 441, 560, 669
TaiI ACGT 2 cut(s) 588, 648
TaqI TCGA 4 cut(s) 114, 170, 316, 704
TaqII GACCGA 1 cut(s) 302
TasI AATT 1 cut(s) 213
TatI WGTACW 3 cut(s) 3, 560, 664
TfiI GAWTC 2 cut(s) 138, 174
Tru1I TTAA 2 cut(s) 119, 434
Tru9I TTAA 2 cut(s) 119, 434
TscAI CASTG 2 cut(s) 535, 563
TseFI GTSAC 3 cut(s) 526, 596, 646
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 3 cut(s) 526, 596, 646
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 2 cut(s) 535, 563
Tth111I GACNNNGTC 1 cut(s) 251
VpaK11BI GGWCC 2 cut(s) 46, 475
XagI CCTNNNNNAGG 1 cut(s) 783
XceI RCATGY 1 cut(s) 778
XcmI CCANNNNNNNNNTGG 2 cut(s) 265, 563
XmiI GTMKAC 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.