Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19900711 .. 19903521

Gene Structure 2811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTGGCCATTAAATTTGCTCTTGACATCGCTCATGCTATGGAATGTTTACATGCCAATGGGATCGATACATAGAGATCTAAAACCTGATAATTTGTTGCTTACAGCAAATCAGAAACATGTAAAGCTTGCAGATTTTGGTCTTGCAAGAGAAGAAAGTGTTACAGAGATGATGACGGCAGAAACTGGGACTTACCGCTGGATGGCTCCTGAGCTGTATAGCACGGTTACTCTACGCCAGGGAGAGAAGAAGCATTACAATAACAAGGTTGATGTATATAGCTTTGGGATTGTCTTATGGGAATTATTGACTAACCGCATGCCCTTCGAAGGCATGTCCAATTTGCAGGCTGCTTATGCTGCTGCTTTCAAGCACGCGAGGCCTCTACTTTCGGAGGACGTATCCCCTGATCTTGCATTTATCATCCAGTCATGTTGGGTTGAAGACCCTAATCTAAGGCCTACGTTCAGCCAGATCATCCGCATGCTCAACTCATTCCTCTTCAAGCTCTCACCACCCTCACCGCCTATACCAGACACTGACACGAAAGAAGCAGCAGCGAGTAATGGTACAATGACTGAATTCTCTGTCCGGACAAGAGGGAAGTTCGCTTTCCTCAGACAACTGTTCAATGCCAAGAGGACCAAGAGCTCACAATGCCTTGACGAGAAAAGAATAGAAAAAAAAACTGAAGATTGTTCACATTGTGTAGGAGGTGACCTTATTGTAAAGGAAAAATACATGGTTTTTGGACAATTTTCTCTTAACAAACGGTACCCTTCCTCTTTTACCCAAAACATTTTGAGTATTTACATTTTCGAATCCGCCCAAGCTCTCCTCACGAAGGCGGGTCTCTTCTTCTCTCACCAACCCATCTTCGGAAACCTCGTCGCATTTGCGTCGCTGTCTCCCCTGGGCTGCCTCGCGCACGCCCTCGAAGAGACCGCCGGGGACGACCCTTTCGTCTGTAACATCATGATCAGAGTTTACAGCAACAATGTCTTTCCCGTCAGTGCTACACACATTTTCAACCATATGCAGGAGATGGGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

352

Amino Acids

39.77

Weight (kDa)

6.76

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 161	4.5e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 163	1.7e-29	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	962
Acc65I	GGTACC	1 cut(s)	774
AccB1I	GGYRCC	1 cut(s)	774
AccII	CGCG	2 cut(s)	377, 926
AccIII	TCCGGA	1 cut(s)	591
AciI	CCGC	7 cut(s)	196, 316, 481, 524, 825, 848, 945
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	13, 581
AcuI	CTGAAG	1 cut(s)	711
AdeI	CACNNNGTG	1 cut(s)	707
AfaI	GTAC	2 cut(s)	571, 776
AfiI	CCNNNNNNNGG	5 cut(s)	202, 329, 844, 878, 1039
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	5 cut(s)	370, 443, 505, 631, 1030
AjnI	CCWGG	2 cut(s)	237, 912
AluBI	AGCT	6 cut(s)	127, 214, 282, 508, 651, 833
AluI	AGCT	6 cut(s)	127, 214, 282, 508, 651, 833
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	3 cut(s)	857, 912, 935
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	2 cut(s)	185, 539
Aor13HI	TCCGGA	1 cut(s)	591
AoxI	GGCC	3 cut(s)	5, 380, 458
ApeKI	GCWGC	6 cut(s)	350, 359, 362, 554, 557, 918
ApoI	RAATTY	2 cut(s)	13, 581
ArsI	GACNNNNNNTTYG	2 cut(s)	944, 976
Asp718I	GGTACC	1 cut(s)	774
AspLEI	GCGC	1 cut(s)	928
AspS9I	GGNCC	1 cut(s)	642
AsuC2I	CCSGG	1 cut(s)	949
AsuHPI	GGTGA	4 cut(s)	504, 513, 728, 857
AsuII	TTCGAA	2 cut(s)	327, 819
AvaII	GGWCC	1 cut(s)	642
BalI	TGGCCA	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	774
BanII	GRGCYC	1 cut(s)	653
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	6 cut(s)	337, 346, 349, 566, 569, 905
BccI	CCATC	3 cut(s)	196, 881, 1039
BceAI	ACGGC	1 cut(s)	192
BcgI	CGANNNNNNTGC	4 cut(s)	307, 341, 882, 916
BciT130I	CCWGG	2 cut(s)	239, 914
BciVI	GTATCC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	978
BcnI	CCSGG	1 cut(s)	949
BcoDI	GTCTC	3 cut(s)	857, 912, 935
BfuI	GTATCC	1 cut(s)	412
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	6 cut(s)	351, 360, 363, 555, 558, 919
BlsI	GCNGC	6 cut(s)	352, 361, 364, 556, 559, 920
Bme1390I	CCNGG	3 cut(s)	239, 914, 949
Bme18I	GGWCC	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	2 cut(s)	207, 776
BmrFI	CCNGG	3 cut(s)	239, 914, 949
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	2 cut(s)	327, 819
BpuMI	CCSGG	1 cut(s)	949
Bsa29I	ATCGAT	1 cut(s)	65
BsaI	GGTCTC	2 cut(s)	857, 935
BsaJI	CCNNGG	4 cut(s)	238, 912, 913, 948
BsaWI	WCCGGW	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 329, 844, 878, 1039
Bse1I	ACTGG	2 cut(s)	190, 427
BseAI	TCCGGA	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	239, 914
BseCI	ATCGAT	1 cut(s)	65
BseDI	CCNNGG	4 cut(s)	238, 912, 913, 948
BseGI	GGATG	3 cut(s)	207, 423, 477
BseLI	CCNNNNNNNGG	5 cut(s)	202, 329, 844, 878, 1039
BseMII	CTCAG	2 cut(s)	201, 631
BseNI	ACTGG	2 cut(s)	190, 427
BseRI	GAGGAG	1 cut(s)	827
BseXI	GCAGC	6 cut(s)	337, 346, 349, 566, 569, 905
Bsh1236I	CGCG	2 cut(s)	377, 926
BshFI	GGCC	3 cut(s)	7, 382, 460
BshNI	GGYRCC	1 cut(s)	774
BshVI	ATCGAT	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	2 cut(s)	592, 948
BslFI	GGGAC	2 cut(s)	202, 965
BslI	CCNNNNNNNGG	5 cut(s)	202, 329, 844, 878, 1039
BsmAI	GTCTC	3 cut(s)	857, 912, 935
BsmFI	GGGAC	2 cut(s)	202, 965
BsnI	GGCC	3 cut(s)	7, 382, 460
Bso31I	GGTCTC	2 cut(s)	857, 935
Bsp119I	TTCGAA	2 cut(s)	327, 819
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp13I	TCCGGA	1 cut(s)	591
Bsp143I	GATC	5 cut(s)	62, 76, 409, 474, 978
BspACI	CCGC	7 cut(s)	196, 316, 481, 524, 825, 848, 945
BspANI	GGCC	3 cut(s)	7, 382, 460
BspCNI	CTCAG	2 cut(s)	202, 630
BspDI	ATCGAT	1 cut(s)	65
BspEI	TCCGGA	1 cut(s)	591
BspFNI	CGCG	2 cut(s)	377, 926
BspHI	TCATGA	1 cut(s)	975
BspLI	GGNNCC	2 cut(s)	207, 776
BspPI	GGATC	1 cut(s)	70
BspT104I	TTCGAA	2 cut(s)	327, 819
BspT107I	GGYRCC	1 cut(s)	774
BspTNI	GGTCTC	2 cut(s)	857, 935
BsrI	ACTGG	2 cut(s)	190, 427
BssECI	CCNNGG	4 cut(s)	238, 912, 913, 948
BssMI	GATC	5 cut(s)	62, 76, 409, 474, 978
Bst2UI	CCWGG	2 cut(s)	239, 914
Bst4CI	ACNGT	3 cut(s)	226, 627, 774
Bst6I	CTCTTC	3 cut(s)	506, 860, 933
BstBI	TTCGAA	2 cut(s)	327, 819
BstC8I	GCNNGC	6 cut(s)	129, 320, 348, 375, 485, 930
BstDEI	CTNAG	3 cut(s)	210, 455, 617
BstEII	GGTNACC	1 cut(s)	716
BstENI	CCTNNNNNAGG	1 cut(s)	842
BstF5I	GGATG	3 cut(s)	207, 423, 477
BstFNI	CGCG	2 cut(s)	377, 926
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	5 cut(s)	65, 79, 412, 477, 981
BstMAI	GTCTC	3 cut(s)	857, 912, 935
BstMBI	GATC	5 cut(s)	62, 76, 409, 474, 978
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 359, 379, 657
BstNI	CCWGG	2 cut(s)	239, 914
BstNSI	RCATGY	5 cut(s)	55, 122, 322, 337, 487
BstPI	GGTNACC	1 cut(s)	716
BstSCI	CCNGG	3 cut(s)	237, 912, 947
BstUI	CGCG	2 cut(s)	377, 926
BstV1I	GCAGC	6 cut(s)	337, 346, 349, 566, 569, 905
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	7, 382, 460
BsuTUI	ATCGAT	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	207, 423, 477
BtsIMutI	CAGTG	2 cut(s)	537, 1018
Cac8I	GCNNGC	6 cut(s)	129, 320, 348, 375, 485, 930
CaiI	CAGNNNCTG	2 cut(s)	185, 539
CciI	TCATGA	1 cut(s)	975
CfoI	GCGC	1 cut(s)	928
Cfr13I	GGNCC	1 cut(s)	642
ClaI	ATCGAT	1 cut(s)	65
CseI	GACGC	1 cut(s)	888
Csp6I	GTAC	2 cut(s)	570, 775
CviAII	CATG	9 cut(s)	34, 52, 119, 319, 334, 432, 484, 742, 976
CviQI	GTAC	2 cut(s)	570, 775
DdeI	CTNAG	3 cut(s)	210, 455, 617
DpnI	GATC	5 cut(s)	64, 78, 411, 476, 980
DpnII	GATC	5 cut(s)	62, 76, 409, 474, 978
DraIII	CACNNNGTG	1 cut(s)	707
DrdI	GACNNNNNNGTC	1 cut(s)	962
DseDI	GACNNNNNNGTC	1 cut(s)	962
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	3 cut(s)	506, 860, 933
EarI	CTCTTC	3 cut(s)	506, 860, 933
EciI	GGCGGA	1 cut(s)	814
Ecl136II	GAGCTC	1 cut(s)	651
Eco147I	AGGCCT	2 cut(s)	382, 460
Eco24I	GRGCYC	1 cut(s)	653
Eco31I	GGTCTC	2 cut(s)	857, 935
Eco47I	GGWCC	1 cut(s)	642
Eco53kI	GAGCTC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	711
Eco91I	GGTNACC	1 cut(s)	716
EcoICRI	GAGCTC	1 cut(s)	651
EcoNI	CCTNNNNNAGG	1 cut(s)	842
EcoO65I	GGTNACC	1 cut(s)	716
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	237, 912
EcoT38I	GRGCYC	1 cut(s)	653
FaeI	CATG	9 cut(s)	37, 55, 122, 322, 337, 435, 487, 745, 979
FaqI	GGGAC	2 cut(s)	202, 965
FatI	CATG	9 cut(s)	33, 51, 118, 318, 333, 431, 483, 741, 975
FauI	CCCGC	1 cut(s)	841
FauNDI	CATATG	1 cut(s)	1035
FbaI	TGATCA	1 cut(s)	978
Fnu4HI	GCNGC	6 cut(s)	351, 360, 363, 555, 558, 919
FokI	GGATG	3 cut(s)	214, 410, 464
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	6 cut(s)	351, 360, 363, 555, 558, 919
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	6 cut(s)	351, 360, 363, 555, 558, 919
HaeIII	GGCC	3 cut(s)	7, 382, 460
HapII	CCGG	2 cut(s)	592, 948
HgaI	GACGC	1 cut(s)	888
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	9 cut(s)	37, 55, 122, 322, 337, 435, 487, 745, 979
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	821
HpaII	CCGG	2 cut(s)	592, 948
HphI	GGTGA	4 cut(s)	504, 513, 728, 857
Hpy166II	GTNNAC	3 cut(s)	49, 701, 988
Hpy188I	TCNGA	5 cut(s)	114, 394, 620, 881, 983
Hpy188III	TCNNGA	5 cut(s)	22, 209, 592, 841, 976
Hpy8I	GTNNAC	3 cut(s)	49, 701, 988
Hpy99I	CGWCG	2 cut(s)	893, 904
HpyAV	CCTTC	4 cut(s)	323, 334, 789, 838
HpyCH4III	ACNGT	3 cut(s)	226, 627, 774
HpyCH4IV	ACGT	2 cut(s)	399, 464
HpyCH4V	TGCA	5 cut(s)	131, 146, 346, 416, 1039
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 359, 379, 657
HpyF3I	CTNAG	3 cut(s)	210, 455, 617
HpySE526I	ACGT	2 cut(s)	399, 464
Hsp92II	CATG	9 cut(s)	37, 55, 122, 322, 337, 435, 487, 745, 979
HspAI	GCGC	1 cut(s)	926
Kpn2I	TCCGGA	1 cut(s)	591
KpnI	GGTACC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	978
Kzo9I	GATC	5 cut(s)	62, 76, 409, 474, 978
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	6 cut(s)	337, 346, 349, 566, 569, 905
MaeII	ACGT	2 cut(s)	399, 464
MaeIII	GTNAC	4 cut(s)	160, 226, 716, 968
MalI	GATC	5 cut(s)	64, 78, 411, 476, 980
MboI	GATC	5 cut(s)	62, 76, 409, 474, 978
MboII	GAAGA	9 cut(s)	164, 259, 455, 493, 704, 847, 850, 868, 950
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	653
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	6 cut(s)	13, 91, 302, 340, 581, 755
MluNI	TGGCCA	1 cut(s)	7
Mox20I	TGGCCA	1 cut(s)	7
MroI	TCCGGA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	2 cut(s)	11, 765
MslI	CAYNNNNRTG	2 cut(s)	56, 482
Msp20I	TGGCCA	1 cut(s)	7
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	2 cut(s)	592, 948
MspR9I	CCNGG	3 cut(s)	239, 914, 949
MvaI	CCWGG	2 cut(s)	239, 914
MvnI	CGCG	2 cut(s)	377, 926
MwoI	GCNNNNNNNGC	4 cut(s)	356, 359, 379, 657
NciI	CCSGG	1 cut(s)	949
NdeI	CATATG	1 cut(s)	1035
NdeII	GATC	5 cut(s)	62, 76, 409, 474, 978
NlaIII	CATG	9 cut(s)	37, 55, 122, 322, 337, 435, 487, 745, 979
NlaIV	GGNNCC	2 cut(s)	207, 776
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	5 cut(s)	55, 122, 322, 337, 487
NspV	TTCGAA	2 cut(s)	327, 819
PaeI	GCATGC	2 cut(s)	322, 487
PagI	TCATGA	1 cut(s)	975
PasI	CCCWGGG	1 cut(s)	913
PceI	AGGCCT	2 cut(s)	382, 460
PciI	ACATGT	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	2 cut(s)	885, 960
PfeI	GAWTC	1 cut(s)	821
PkrI	GCNGC	6 cut(s)	352, 361, 364, 556, 559, 920
PscI	ACATGT	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	237, 912
PspEI	GGTNACC	1 cut(s)	716
PspGI	CCWGG	2 cut(s)	237, 912
PspN4I	GGNNCC	2 cut(s)	207, 776
PspPI	GGNCC	1 cut(s)	642
PstNI	CAGNNNCTG	2 cut(s)	185, 539
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	2 cut(s)	571, 776
RsaNI	GTAC	2 cut(s)	570, 775
RseI	CAYNNNNRTG	2 cut(s)	56, 482
SacI	GAGCTC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	11, 765
SatI	GCNGC	6 cut(s)	351, 360, 363, 555, 558, 919
Sau3AI	GATC	5 cut(s)	62, 76, 409, 474, 978
Sau96I	GGNCC	1 cut(s)	642
ScrFI	CCNGG	3 cut(s)	239, 914, 949
SduI	GDGCHC	1 cut(s)	653
SfuI	TTCGAA	2 cut(s)	327, 819
SinI	GGWCC	1 cut(s)	642
SmiMI	CAYNNNNRTG	2 cut(s)	56, 482
SphI	GCATGC	2 cut(s)	322, 487
Sse9I	AATT	6 cut(s)	13, 91, 302, 340, 581, 755
SseBI	AGGCCT	2 cut(s)	382, 460
SsiI	CCGC	7 cut(s)	196, 316, 481, 524, 825, 848, 945
SstI	GAGCTC	1 cut(s)	653
StuI	AGGCCT	2 cut(s)	382, 460
StyD4I	CCNGG	3 cut(s)	237, 912, 947
TaaI	ACNGT	3 cut(s)	226, 627, 774
TaiI	ACGT	2 cut(s)	402, 467
TaqI	TCGA	4 cut(s)	65, 327, 819, 936
TasI	AATT	6 cut(s)	13, 91, 302, 340, 581, 755
TfiI	GAWTC	1 cut(s)	821
Tru1I	TTAA	2 cut(s)	11, 765
Tru9I	TTAA	2 cut(s)	11, 765
TscAI	CASTG	2 cut(s)	544, 1018
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	6 cut(s)	350, 359, 362, 554, 557, 918
Tsp45I	GTSAC	1 cut(s)	716
TspRI	CASTG	2 cut(s)	544, 1018
VpaK11BI	GGWCC	1 cut(s)	642
XagI	CCTNNNNNAGG	1 cut(s)	842
XapI	RAATTY	2 cut(s)	13, 581
XceI	RCATGY	5 cut(s)	55, 122, 322, 337, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.