Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20185656 .. 20186148

Gene Structure 493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTGCTCGCCCGAGTGGGCTGCCCATTGCCACAAGAAGGGCATTCTGGAGCACATCCTCGACCCTCATCTCAAGGGGAAGATAACGCCAGAGTGCTTCAAGAAGTTCGCTGAGACAGCAATGAAATGCGTTTCAGACCAAAGCATCGACAGGCCATCAATGGGAGATGTTCTTTGGAACCTTGAGTTCGCTTTGCAGCTACAGGAGAGTGCAGAAGAGAGCGGCAAGGGTATCGGTGGAGGAATGGACATCGAGGAAGAGGAGCCCCTCGTGGACTATAAAGGGAAGAAGGACCCCGACGCAATGCCCGGCTATGATGGTAATGTAACAGACTCAAGGAGCACCGGAATGAGCATGAGCATAGGCGGCCGGAGCCTAGCTAGCGTCGACTCTGATGGTTTGACACCAAGTGCCGTGTTCTCGCAAATCATGCAGCCTAAAGGACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

150

Amino Acids

16.15

Weight (kDa)

4.94

Isoelectric Point (pI)

65.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	2 cut(s)	222, 366
AcoI	YGGCCR	1 cut(s)	367
AdeI	CACNNNGTG	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	37, 161
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	2 cut(s)	199, 380
AluI	AGCT	2 cut(s)	199, 380
Alw21I	GWGCWC	3 cut(s)	8, 54, 344
Alw26I	GTCTC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	152, 367
ApeKI	GCWGC	3 cut(s)	20, 196, 433
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	309
AsuNHI	GCTAGC	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	269
Bbv12I	GWGCWC	3 cut(s)	8, 54, 344
BbvI	GCAGC	3 cut(s)	7, 208, 445
BccI	CCATC	3 cut(s)	163, 311, 389
BceAI	ACGGC	1 cut(s)	398
BcgI	CGANNNNNNTGC	3 cut(s)	36, 214, 248
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	377, 381
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	5 cut(s)	21, 197, 223, 367, 434
BlsI	GCNGC	5 cut(s)	22, 198, 224, 368, 435
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	4 cut(s)	179, 264, 294, 374
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	153
BmtI	GCTAGC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	3 cut(s)	56, 203, 319
BpuMI	CCSGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 161
Bse3DI	GCAATG	3 cut(s)	25, 126, 309
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	37, 161
BseMI	GCAATG	3 cut(s)	25, 126, 309
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	7, 208, 445
BsgI	GTGCAG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	154, 369
BsiEI	CGRYCG	1 cut(s)	370
BsiHKAI	GWGCWC	3 cut(s)	8, 54, 344
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	3 cut(s)	309, 345, 370
BslI	CCNNNNNNNGG	2 cut(s)	37, 161
BsmAI	GTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	154, 369
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	4 cut(s)	8, 54, 267, 344
BspACI	CCGC	2 cut(s)	222, 366
BspANI	GGCC	2 cut(s)	154, 369
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	4 cut(s)	179, 264, 294, 374
BspOI	GCTAGC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	3 cut(s)	25, 126, 309
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
Bst6I	CTCTTC	2 cut(s)	210, 252
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	8, 382
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	107
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 366, 372, 381, 430
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	7, 208, 445
BstZI	CGGCCG	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	154, 369
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	8, 382
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	2 cut(s)	308, 373
CviAII	CATG	2 cut(s)	355, 430
CviJI	RGCY	9 cut(s)	20, 154, 199, 265, 312, 369, 375, 380, 436
CviKI_1	RGCY	9 cut(s)	20, 154, 199, 265, 312, 369, 375, 380, 436
DdeI	CTNAG	1 cut(s)	111
DraIII	CACNNNGTG	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	367
EagI	CGGCCG	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	210, 252
EarI	CTCTTC	2 cut(s)	210, 252
EclXI	CGGCCG	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	2 cut(s)	358, 433
FaiI	YATR	5 cut(s)	279, 315, 356, 362, 431
FatI	CATG	2 cut(s)	354, 429
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	5 cut(s)	21, 197, 223, 367, 434
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	5 cut(s)	21, 197, 223, 367, 434
FspBI	CTAG	2 cut(s)	377, 381
GluI	GCNGC	5 cut(s)	21, 197, 223, 367, 434
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	154, 369
HapII	CCGG	3 cut(s)	309, 345, 370
HgaI	GACGC	2 cut(s)	308, 373
Hin1II	CATG	2 cut(s)	358, 433
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	2 cut(s)	332, 389
HpaII	CCGG	3 cut(s)	309, 345, 370
Hpy166II	GTNNAC	2 cut(s)	274, 388
Hpy188I	TCNGA	2 cut(s)	136, 394
Hpy188III	TCNNGA	2 cut(s)	47, 100
Hpy8I	GTNNAC	2 cut(s)	274, 388
Hpy99I	CGWCG	2 cut(s)	302, 389
HpyAV	CCTTC	2 cut(s)	31, 283
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	3 cut(s)	196, 212, 433
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 366, 372, 381, 430
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	2 cut(s)	358, 433
LmnI	GCTCC	4 cut(s)	49, 262, 339, 372
LpnPI	CCDG	7 cut(s)	32, 102, 136, 188, 322, 358, 383
Lsp1109I	GCAGC	3 cut(s)	7, 208, 445
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	377, 381
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	325
MbiI	CCGCTC	1 cut(s)	222
MboII	GAAGA	4 cut(s)	91, 227, 269, 298
MhlI	GDGCHC	4 cut(s)	8, 54, 267, 344
MlyI	GAGTC	2 cut(s)	326, 383
MnlI	CCTC	6 cut(s)	68, 75, 233, 247, 253, 278
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	3 cut(s)	309, 345, 370
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	5 cut(s)	116, 366, 372, 381, 430
NciI	CCSGG	1 cut(s)	309
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	2 cut(s)	358, 433
NlaIV	GGNNCC	4 cut(s)	179, 264, 294, 374
PctI	GAATGC	1 cut(s)	42
PkrI	GCNGC	5 cut(s)	22, 198, 224, 368, 435
PleI	GAGTC	2 cut(s)	326, 383
PpsI	GAGTC	2 cut(s)	326, 383
PpuMI	RGGWCCY	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	292
PspN4I	GGNNCC	4 cut(s)	179, 264, 294, 374
PspPI	GGNCC	1 cut(s)	292
PspPPI	RGGWCCY	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	347
SalI	GTCGAC	1 cut(s)	386
SatI	GCNGC	5 cut(s)	21, 197, 223, 367, 434
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	2 cut(s)	326, 383
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	4 cut(s)	8, 54, 267, 344
SetI	ASST	4 cut(s)	183, 201, 382, 448
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	3 cut(s)	71, 182, 334
SmoI	CTYRAG	3 cut(s)	71, 182, 334
SsiI	CCGC	2 cut(s)	222, 366
SspMI	CTAG	2 cut(s)	377, 381
StyD4I	CCNGG	1 cut(s)	307
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	4 cut(s)	60, 147, 252, 387
TauI	GCSGC	2 cut(s)	225, 369
TseI	GCWGC	3 cut(s)	20, 196, 433
TspDTI	ATGAA	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	2 cut(s)	377, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.