Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20243970 .. 20245661

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAACGATGCAGATGTGTCGAAGCAGATTCAGCAAATGGTCAGATTCATTCGGCAAGAGGCCGAAGAGAAAGCCAATGAGATTTCTGTCTCTGCTGAGGAGAGTTTACTGCGGCTAAAGGAGCCAGCAGTGTTGCTGAGGTGCAGAGAGGTTGACAAGAAGGTGGTTGAGTCTGTGTTGGAGGAAGCAAAGAAAGCTTATGCTGATAAAGCCAAGGTTTCCGCCCCAAAAGTCACTGTCGACGGTCGTGTGTTTCTCCCACCTCCTCCGAAGGTGGTGGTGGCCTCCCAAGACGGGAAGATTGTGTGTGAAAACACCCTTGATGCACGATTGGATGTCGTGTACAGACAGAAACTGCCTGAGGTAAGGCTAAGCAAATTTTGTACTCCATTTGGACATTCATTCAGCACACCAGAATCGAAACAAAACTCAAAATCTTTACTTTGGATGATCAGTTCACTTATTTTCGTTCTTTCACTGCAGATTCGGAAGCGCCTTTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00380 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map00380 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

169

Amino Acids

18.92

Weight (kDa)

9.28

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_E	PF01991	34 - 125	1.1e-18	ATP synthase (E/31 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	2 cut(s)	112, 222
AcsI	RAATTY	1 cut(s)	377
AfaI	GTAC	2 cut(s)	344, 385
AfiI	CCNNNNNNNGG	1 cut(s)	294
AloI	GAACNNNNNNTCC	2 cut(s)	439, 471
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	60, 282
ApoI	RAATTY	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	495
AxyI	CCTNAGG	1 cut(s)	360
BbvCI	CCTCAGC	2 cut(s)	96, 137
BcgI	CGANNNNNNTGC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	496
BisI	GCNGC	1 cut(s)	113
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	123
BmsI	GCATC	1 cut(s)	313
Bpu10I	CCTNAGC	2 cut(s)	96, 137
Bpu1102I	GCTNAGC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse21I	CCTNAGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	340, 453
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	87, 128, 351
BseRI	GAGGAG	2 cut(s)	113, 255
BsgI	GTGCAG	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	62, 284
BsiEI	CGRYCG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	62, 284
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	450
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	2 cut(s)	112, 222
BspANI	GGCC	2 cut(s)	62, 284
BspCNI	CTCAG	3 cut(s)	88, 129, 352
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	483
BsrGI	TGTACA	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	238, 245
Bst6I	CTCTTC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	4 cut(s)	96, 137, 360, 371
BstF5I	GGATG	2 cut(s)	340, 453
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	1 cut(s)	453
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	450
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 121, 194, 209
BstSFI	CTRYAG	1 cut(s)	479
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	62, 284
BtsCI	GGATG	2 cut(s)	340, 453
BtsI	GCAGTG	2 cut(s)	135, 476
BtsIMutI	CAGTG	3 cut(s)	135, 234, 476
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	343, 384
CviJI	RGCY	8 cut(s)	62, 74, 115, 124, 197, 212, 284, 370
CviKI_1	RGCY	8 cut(s)	62, 74, 115, 124, 197, 212, 284, 370
CviQI	GTAC	2 cut(s)	343, 384
DdeI	CTNAG	4 cut(s)	96, 137, 360, 371
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	213
Eco81I	CCTNAGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaiI	YATR	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	2 cut(s)	347, 460
Fsp4HI	GCNGC	1 cut(s)	113
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	62, 284
HhaI	GCGC	1 cut(s)	495
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	2 cut(s)	154, 241
HindII	GTYRAC	2 cut(s)	154, 241
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	5 cut(s)	28, 45, 170, 416, 484
Hpy166II	GTNNAC	5 cut(s)	107, 154, 241, 343, 458
Hpy188I	TCNGA	3 cut(s)	44, 270, 489
Hpy8I	GTNNAC	5 cut(s)	107, 154, 241, 343, 458
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	154, 265
HpyCH4III	ACNGT	2 cut(s)	238, 245
HpyCH4V	TGCA	4 cut(s)	11, 144, 326, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 121, 194, 209
HpyF3I	CTNAG	4 cut(s)	96, 137, 360, 371
HspAI	GCGC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	138, 372, 426
LweI	GCATC	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	452
MboI	GATC	1 cut(s)	450
MboII	GAAGA	2 cut(s)	77, 310
MluCI	AATT	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	9 cut(s)	52, 91, 132, 142, 175, 273, 276, 295, 355
MseI	TTAA	1 cut(s)	505
MwoI	GCNNNNNNNGC	4 cut(s)	31, 121, 194, 209
NdeII	GATC	1 cut(s)	450
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	232
PfeI	GAWTC	4 cut(s)	28, 45, 416, 484
PkrI	GCNGC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	123
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	355
RsaI	GTAC	2 cut(s)	344, 385
RsaNI	GTAC	2 cut(s)	343, 384
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	1 cut(s)	450
SchI	GAGTC	1 cut(s)	179
SetI	ASST	9 cut(s)	143, 153, 165, 199, 219, 265, 276, 366, 505
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	377
SsiI	CCGC	2 cut(s)	112, 222
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	238, 245
TaqI	TCGA	3 cut(s)	20, 240, 419
TasI	AATT	1 cut(s)	377
TatI	WGTACW	2 cut(s)	342, 383
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	4 cut(s)	28, 45, 416, 484
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TscAI	CASTG	3 cut(s)	135, 241, 483
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	3 cut(s)	17, 37, 390
TspRI	CASTG	3 cut(s)	135, 241, 483
XapI	RAATTY	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.