pycom12g18220

LURP-one-related 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
20423930 .. 20424515
586 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGTCGAGGATACATCCAGCATCGGCGTTGAAAGAAAGGGTTCATCATCAGGTGGAAGATGTTCATGCGCCTCCGTCTGTGCTCACCGTGTGGAAGAGATCTATCATGAGTTTCCAGGGAACTGATGGATTTACGGTGTTTGACGATCGCGGAATACTAAGTTTTCGAGTAGACAATTATTCGAGGAAGAGCTGTTGTGTTAGAGGAGGGCTTGTCCTCATGGATGGAGCTGGAAGAGCCTTGCTAACCCTCAAACCCCAGATGTTGAGCTTGCAAGATCAATGGAATGAATATAGAGGAGAAGATGGATATGGAAAGAACCCTAAATCCAGCAGAGTCTTCACCATGAAAAGTGGATCGATCAAATCTTTTTGGCAGCAGAAACAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

131

Amino Acids

14.78

Weight (kDa)

9.82

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 27 - 119 1.4e-12 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 364
AdeI CACNNNGTG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 114
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 3 cut(s) 192, 230, 270
AluI AGCT 3 cut(s) 192, 230, 270
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 1 cut(s) 364
ApeKI GCWGC 1 cut(s) 376
Asp700I GAANNNNTTC 2 cut(s) 39, 60
AspLEI GCGC 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 76, 334
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 388
BccI CCATC 3 cut(s) 119, 218, 299
BciT130I CCWGG 1 cut(s) 116
BciVI GTATCC 1 cut(s) 3
BfuI GTATCC 1 cut(s) 3
BglII AGATCT 1 cut(s) 98
BisI GCNGC 1 cut(s) 377
BlsI GCNGC 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 331
Bsa29I ATCGAT 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
BseBI CCWGG 1 cut(s) 116
BseCI ATCGAT 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 2 cut(s) 13, 229
BseRI GAGGAG 2 cut(s) 219, 312
BseXI GCAGC 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 5 cut(s) 98, 145, 277, 356, 360
BspACI CCGC 1 cut(s) 150
BspDI ATCGAT 1 cut(s) 359
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 105
BspPI GGATC 1 cut(s) 364
BspQI GCTCTTC 2 cut(s) 182, 229
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 5 cut(s) 98, 145, 277, 356, 360
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 88, 136
Bst6I CTCTTC 3 cut(s) 89, 182, 229
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 13, 229
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 5 cut(s) 101, 148, 280, 359, 363
BstMBI GATC 5 cut(s) 98, 145, 277, 356, 360
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 359
BsuI GTATCC 1 cut(s) 3
BsuTUI ATCGAT 1 cut(s) 359
BtsCI GGATG 2 cut(s) 13, 229
Cac8I GCNNGC 1 cut(s) 272
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 359
CviAII CATG 4 cut(s) 65, 106, 220, 346
CviJI RGCY 5 cut(s) 192, 211, 230, 239, 270
CviKI_1 RGCY 5 cut(s) 192, 211, 230, 239, 270
DdeI CTNAG 1 cut(s) 158
DpnI GATC 5 cut(s) 100, 147, 279, 358, 362
DpnII GATC 5 cut(s) 98, 145, 277, 356, 360
DraIII CACNNNGTG 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 89, 182, 229
EarI CTCTTC 3 cut(s) 89, 182, 229
EcoRII CCWGG 1 cut(s) 114
FaeI CATG 4 cut(s) 68, 109, 223, 349
FaiI YATR 6 cut(s) 66, 107, 221, 294, 312, 347
FatI CATG 4 cut(s) 64, 105, 219, 345
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 377
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 377
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 377
HhaI GCGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 68, 109, 223, 349
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 1 cut(s) 336
HphI GGTGA 2 cut(s) 76, 334
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 88, 136
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 4 cut(s) 68, 109, 223, 349
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 5 cut(s) 98, 145, 277, 356, 360
LguI GCTCTTC 2 cut(s) 182, 229
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 7 cut(s) 30, 35, 101, 128, 216, 272, 343
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 29
MalI GATC 5 cut(s) 100, 147, 279, 358, 362
MboI GATC 5 cut(s) 98, 145, 277, 356, 360
MboII GAAGA 6 cut(s) 68, 106, 199, 246, 314, 331
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 175
MlyI GAGTC 1 cut(s) 345
MnlI CCTC 7 cut(s) 81, 177, 197, 200, 227, 260, 290
MroXI GAANNNNTTC 2 cut(s) 39, 60
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 5 cut(s) 98, 145, 277, 356, 360
NlaIII CATG 4 cut(s) 68, 109, 223, 349
PagI TCATGA 1 cut(s) 105
PciSI GCTCTTC 2 cut(s) 182, 229
PdmI GAANNNNTTC 2 cut(s) 39, 60
PkrI GCNGC 1 cut(s) 378
Ple19I CGATCG 1 cut(s) 148
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PsuI RGATCY 1 cut(s) 98
PvuI CGATCG 1 cut(s) 148
SapI GCTCTTC 2 cut(s) 182, 229
SatI GCNGC 1 cut(s) 377
Sau3AI GATC 5 cut(s) 98, 145, 277, 356, 360
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 54, 194, 232, 272
SfaNI GCATC 1 cut(s) 29
Sse9I AATT 1 cut(s) 175
SsiI CCGC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 88, 136
TaqI TCGA 4 cut(s) 5, 166, 182, 359
TasI AATT 1 cut(s) 175
TseI GCWGC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 32, 53, 303, 362
TspGWI ACGGA 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 2 cut(s) 39, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.