Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20428503 .. 20429156

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTTTGGAAGATGGGAACTCAGAGAACGCGCGAAGCTGGGCGAGGTTTCTGGCCACGTGTCTCGTCGGTGGGGTGGTGGTGGCGGTGGGGGTCGGCGTCGGGGTGTCGCTTCTGGGTTCACAAGAACGCGGCGGACCTCATCTTCCTCTGGGACTTCGATGGCGGAGGAAGAAGAACAGACCCGTGCGGGTTTATATGGACGGCTGCTTCGACATGATGCACTACGGCCACTGCAACGCCCTCCGTCAGGCGCGCGCTCTGGGCGACCAATTGGTCGTTGGTGTCGTCAGCGACGCCGAAATCATCGTCAATAAAGGCCCCCCTGTGACTCCTCTCAACGAAAGGATGATTATGGTTAATGCTGTGAAATGGGTTGATGAGGTGATTCCAGATGCACCTTATGCCATAACCGAAGAGTTCATGAAGAAGCTGTTTGATGAATACAATATTGACTATATCATTCATGGAGATGACCCATGTGTGCTTCCTGATGGGACTGATGCTTATGCTCTTGCGAAGAAGGCCGGCCGCTACAAGCAAAAATCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004306 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006629 GO:0006644 GO:0006646 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0016021 GO:0016740 GO:0016772 GO:0016779 GO:0019637 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045017 GO:0046337 GO:0046474 GO:0046486 GO:0070567 GO:0071704 GO:0090407 GO:0098573 GO:0098588 GO:0098805 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00440 ko00564 ko01100 map00440 map00564 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

185

Amino Acids

20.26

Weight (kDa)

6.9

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	66 - 161	3.1e-23	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccII	CGCG	5 cut(s)	32, 34, 132, 256, 258
AciI	CCGC	6 cut(s)	86, 132, 135, 166, 190, 532
AcoI	YGGCCR	3 cut(s)	54, 229, 529
AcvI	CACGTG	1 cut(s)	60
AcyI	GRCGYC	2 cut(s)	99, 297
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	59
AluBI	AGCT	2 cut(s)	39, 433
AluI	AGCT	2 cut(s)	39, 433
Alw26I	GTCTC	1 cut(s)	68
AoxI	GGCC	5 cut(s)	54, 229, 319, 525, 529
ApeKI	GCWGC	1 cut(s)	207
ArsI	GACNNNNNNTTYG	4 cut(s)	194, 226, 294, 326
AspLEI	GCGC	4 cut(s)	34, 256, 258, 260
AspS9I	GGNCC	2 cut(s)	137, 320
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	56
BbrPI	CACGTG	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	8, 156, 488
BceAI	ACGGC	2 cut(s)	220, 244
BcoDI	GTCTC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	133, 208, 532
BlsI	GCNGC	3 cut(s)	134, 209, 533
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	137, 320
BmiI	GGNNCC	1 cut(s)	322
BmsI	GCATC	3 cut(s)	210, 385, 493
BsaAI	YACGTR	1 cut(s)	60
BsaHI	GRCGYC	2 cut(s)	99, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	527
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	36
BsePI	GCGCGC	2 cut(s)	254, 256
BseRI	GAGGAG	1 cut(s)	324
BseX3I	CGGCCG	1 cut(s)	529
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	39
Bsh1236I	CGCG	5 cut(s)	32, 34, 132, 256, 258
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	5 cut(s)	56, 231, 321, 527, 531
BsiEI	CGRYCG	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	2 cut(s)	168, 511
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	168, 511
BsnI	GGCC	5 cut(s)	56, 231, 321, 527, 531
BspACI	CCGC	6 cut(s)	86, 132, 135, 166, 190, 532
BspANI	GGCC	5 cut(s)	56, 231, 321, 527, 531
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	5 cut(s)	32, 34, 132, 256, 258
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	527
BssHII	GCGCGC	2 cut(s)	254, 256
BssNI	GRCGYC	2 cut(s)	99, 297
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	2 cut(s)	99, 297
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	256, 258, 529
BstDEI	CTNAG	2 cut(s)	22, 552
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	5 cut(s)	32, 34, 132, 256, 258
BstHHI	GCGC	4 cut(s)	34, 256, 258, 260
BstMAI	GTCTC	1 cut(s)	68
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	3 cut(s)	264, 404, 524
BstUI	CGCG	5 cut(s)	32, 34, 132, 256, 258
BstV1I	GCAGC	1 cut(s)	194
BstZI	CGGCCG	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	56, 231, 321, 527, 531
BtsCI	GGATG	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	256, 258, 529
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	4 cut(s)	34, 256, 258, 260
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	137, 320
CseI	GACGC	2 cut(s)	88, 305
CviAII	CATG	4 cut(s)	217, 424, 467, 480
CviJI	RGCY	8 cut(s)	39, 56, 207, 231, 321, 433, 527, 531
CviKI_1	RGCY	8 cut(s)	39, 56, 207, 231, 321, 433, 527, 531
DdeI	CTNAG	2 cut(s)	22, 552
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	3 cut(s)	54, 229, 529
EagI	CGGCCG	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	2 cut(s)	150, 181
EclXI	CGGCCG	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	137
Eco52I	CGGCCG	1 cut(s)	529
Eco72I	CACGTG	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	320
FaeI	CATG	4 cut(s)	220, 427, 470, 483
FaqI	GGGAC	2 cut(s)	168, 511
FatI	CATG	4 cut(s)	216, 423, 466, 479
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	133, 208, 532
FokI	GGATG	1 cut(s)	361
FseI	GGCCGGCC	1 cut(s)	531
Fsp4HI	GCNGC	3 cut(s)	133, 208, 532
GlaI	GCGC	4 cut(s)	33, 255, 257, 259
GluI	GCNGC	3 cut(s)	133, 208, 532
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	5 cut(s)	56, 231, 321, 527, 531
HapII	CCGG	1 cut(s)	528
HgaI	GACGC	2 cut(s)	88, 305
HhaI	GCGC	4 cut(s)	34, 256, 258, 260
Hin1I	GRCGYC	2 cut(s)	99, 297
Hin1II	CATG	4 cut(s)	220, 427, 470, 483
Hin6I	GCGC	4 cut(s)	32, 254, 256, 258
HinP1I	GCGC	4 cut(s)	32, 254, 256, 258
HinfI	GANTC	2 cut(s)	331, 388
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	3 cut(s)	392, 424, 491
Hpy8I	GTNNAC	1 cut(s)	122
Hpy99I	CGWCG	3 cut(s)	71, 104, 299
HpyAV	CCTTC	1 cut(s)	517
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	223, 237, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	264, 404, 524
HpyF3I	CTNAG	2 cut(s)	22, 552
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	2 cut(s)	99, 297
Hsp92II	CATG	4 cut(s)	220, 427, 470, 483
HspAI	GCGC	4 cut(s)	32, 254, 256, 258
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	3 cut(s)	210, 385, 493
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	328
MboII	GAAGA	7 cut(s)	23, 137, 184, 187, 428, 439, 532
MfeI	CAATTG	1 cut(s)	272
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	7 cut(s)	39, 150, 159, 162, 254, 345, 376
Mox20I	TGGCCA	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	1 cut(s)	528
MunI	CAATTG	1 cut(s)	272
MvnI	CGCG	5 cut(s)	32, 34, 132, 256, 258
MwoI	GCNNNNNNNGC	3 cut(s)	264, 404, 524
NaeI	GCCGGC	1 cut(s)	529
NgoMIV	GCCGGC	1 cut(s)	527
NlaIII	CATG	4 cut(s)	220, 427, 470, 483
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	328
PagI	TCATGA	1 cut(s)	423
PauI	GCGCGC	2 cut(s)	254, 256
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 285
PdiI	GCCGGC	1 cut(s)	529
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	134, 209, 533
PleI	GAGTC	1 cut(s)	325
PmaCI	CACGTG	1 cut(s)	60
PmlI	CACGTG	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	60
PspCI	CACGTG	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	137, 320
PteI	GCGCGC	2 cut(s)	254, 256
RigI	GGCCGGCC	1 cut(s)	531
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	3 cut(s)	133, 208, 532
Sau96I	GGNCC	2 cut(s)	137, 320
SchI	GAGTC	1 cut(s)	325
SetI	ASST	7 cut(s)	41, 50, 62, 142, 387, 403, 435
SfaNI	GCATC	3 cut(s)	210, 385, 493
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	6 cut(s)	86, 132, 135, 166, 190, 532
SspI	AATATT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	160, 213
TasI	AATT	1 cut(s)	272
TauI	GCSGC	2 cut(s)	135, 534
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	4 cut(s)	412, 440, 455, 456
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.