Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21023181 .. 21025346

Gene Structure 2166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCTGAGAAGGCGAAGGATGCGAAGAAGAAAAGCTTCAAACTTTCGATTTTGCTTTTGTGGATTTGAAATTTATTCTAATTTTTTTTTTTTTACACAGAGAGAGATGTTGCAGTGCATATTTCTGCTATCGGATTCTGGTGAGGTAATGCTGGAGAAACAGCTTACTGGGCAGCGTGTGGACCGTTCGATATGCACATGGTTCTGGGAGCATACAATTTCTCAAGGTGATTCTCCCAAGCTGCAACCGGTAATTGCTTCGCCAACGCACTATCTTTTCCAAATTCTTCGCGAGGGGATAACGTTTTTAGCTTGTACCCAAGTTGAAATGCCGCCTTTGATGGGCATCGAGTTTCTGTGCAGAGTAGCTGATGTCCTGACAGATTATCTTGGCAGCTTGAATGAAGACTTGATTAAAGATAACTTTGTCATTGTATATGAGCTTCTGGATGAGATGATTGACAATGGCTTCCCTCTCATTGCAGAGCCGAATATTCTGAGAGAGATGATTGCTCCACCAAATATGGTAGACAAGGTGTTGAGTGTAGTCACTGGCAACAGTTCCAACATGATCGACACACTTCCGGGTTCAACGTCATCTTGCATTCCATGGAGAACAACAGACCCAAAATATGCAAACAATGAAGTTTATGTTGATCTTGTTGAAGAAATGGATGCAATTATAAACAGGGATGGGGTCCTGGTGAAATGTGAGATATATGGTGAAGTTCAAGTAAACTCCCATCTCTCTGGTGTCCCTGATTTGACTATTTCATTTGCAAACCCTGCTATTCTTGATGATGTAAGATTTCATCCATGTGTTCGATTTCGCTCATGGGAAGCCCATCAAGTTCTGTCGTTCGTGCCCCCTGACGGACAGTTTAAGTTGATGAGTTACAGGTCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008088 GO:0008089 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010970 GO:0016192 GO:0030705 GO:0046907 GO:0047496 GO:0048489 GO:0048490 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0097479 GO:0097480 GO:0098930 GO:0099003 GO:0099111 GO:0099514 GO:0099517 GO:0099518

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 ko04142 map04137 map04139 map04142

Pfam Domains

Protein Families

Adap_comp_sub

Protein Analysis

303

Amino Acids

34.65

Weight (kDa)

5.05

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	202 - 300	3.3e-38	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	528
AccII	CGCG	1 cut(s)	291
AciI	CCGC	1 cut(s)	332
AclI	AACGTT	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	69, 282
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	341, 872
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	7 cut(s)	39, 68, 326, 400, 591, 665, 731
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	7 cut(s)	35, 163, 241, 311, 368, 396, 442
AluI	AGCT	7 cut(s)	35, 163, 241, 311, 368, 396, 442
ApeKI	GCWGC	3 cut(s)	172, 241, 393
ApoI	RAATTY	2 cut(s)	69, 282
AsiGI	ACCGGT	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	181, 697
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	4 cut(s)	152, 239, 715, 734
AvaII	GGWCC	2 cut(s)	181, 697
BaeGI	GKGCMC	1 cut(s)	867
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	184, 228, 405
BccI	CCATC	4 cut(s)	334, 686, 750, 852
BciT130I	CCWGG	1 cut(s)	701
BcnI	CCSGG	1 cut(s)	585
BisI	GCNGC	4 cut(s)	173, 242, 332, 394
BlsI	GCNGC	4 cut(s)	174, 243, 333, 395
Bme1390I	CCNGG	2 cut(s)	585, 701
Bme18I	GGWCC	2 cut(s)	181, 697
BmgT120I	GGNCC	2 cut(s)	181, 697
BmiI	GGNNCC	1 cut(s)	698
BmrFI	CCNGG	2 cut(s)	585, 701
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	3 cut(s)	9, 354, 664
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	608
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 872
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	172, 556
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	1 cut(s)	608
BseGI	GGATG	5 cut(s)	24, 454, 679, 697, 811
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	341, 872
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	172, 556
BseSI	GKGCMC	1 cut(s)	867
BseXI	GCAGC	3 cut(s)	184, 228, 405
BsgI	GTGCAG	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	291
BshTI	ACCGGT	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	248, 584
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	2 cut(s)	341, 872
BsmFI	GGGAC	1 cut(s)	740
BsmI	GAATGC	1 cut(s)	603
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp143I	GATC	2 cut(s)	570, 655
Bsp19I	CCATGG	1 cut(s)	608
Bsp68I	TCGCGA	1 cut(s)	291
BspACI	CCGC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	489
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	172, 556
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	608
BssMI	GATC	2 cut(s)	570, 655
BssT1I	CCWWGG	1 cut(s)	608
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	3 cut(s)	185, 560, 879
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstDEI	CTNAG	2 cut(s)	5, 497
BstDSI	CCRYGG	1 cut(s)	608
BstF5I	GGATG	5 cut(s)	24, 454, 679, 697, 811
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	573, 658
BstMBI	GATC	2 cut(s)	570, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 169, 785
BstNI	CCWGG	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	583, 699
BstSLI	GKGCMC	1 cut(s)	867
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	184, 228, 405
BstV2I	GAAGAC	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	749
BtgI	CCRYGG	1 cut(s)	608
BtsCI	GGATG	5 cut(s)	24, 454, 679, 697, 811
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	119, 549
BtuMI	TCGCGA	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	181, 697
Csp6I	GTAC	1 cut(s)	315
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	5 cut(s)	198, 568, 609, 816, 834
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	2 cut(s)	5, 497
DpnI	GATC	2 cut(s)	572, 657
DpnII	GATC	2 cut(s)	570, 655
Eco130I	CCWWGG	1 cut(s)	608
Eco47I	GGWCC	2 cut(s)	181, 697
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	5 cut(s)	201, 571, 612, 819, 837
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FaqI	GGGAC	1 cut(s)	740
FatI	CATG	5 cut(s)	197, 567, 608, 815, 833
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	4 cut(s)	173, 242, 332, 394
FokI	GGATG	5 cut(s)	31, 461, 686, 704, 798
Fsp4HI	GCNGC	4 cut(s)	173, 242, 332, 394
GluI	GCNGC	4 cut(s)	173, 242, 332, 394
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	248, 584
Hin1II	CATG	5 cut(s)	201, 571, 612, 819, 837
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	2 cut(s)	134, 230
HpaII	CCGG	2 cut(s)	248, 584
HphI	GGTGA	4 cut(s)	152, 239, 715, 734
Hpy166II	GTNNAC	3 cut(s)	181, 529, 736
Hpy188I	TCNGA	2 cut(s)	133, 498
Hpy188III	TCNNGA	4 cut(s)	290, 376, 446, 794
Hpy8I	GTNNAC	3 cut(s)	181, 529, 736
HpyAV	CCTTC	2 cut(s)	3, 9
HpyCH4III	ACNGT	3 cut(s)	185, 560, 879
HpyCH4IV	ACGT	2 cut(s)	302, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 169, 785
HpyF3I	CTNAG	2 cut(s)	5, 497
HpySE526I	ACGT	2 cut(s)	302, 593
Hsp92II	CATG	5 cut(s)	201, 571, 612, 819, 837
Kzo9I	GATC	2 cut(s)	570, 655
LmnI	GCTCC	2 cut(s)	208, 517
Lsp1109I	GCAGC	3 cut(s)	184, 228, 405
LweI	GCATC	3 cut(s)	9, 354, 664
MaeII	ACGT	2 cut(s)	302, 593
MaeIII	GTNAC	2 cut(s)	547, 893
MalI	GATC	2 cut(s)	572, 657
MboI	GATC	2 cut(s)	570, 655
MboII	GAAGA	5 cut(s)	36, 39, 278, 416, 677
MhlI	GDGCHC	1 cut(s)	867
MluCI	AATT	6 cut(s)	69, 79, 216, 252, 282, 678
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	3 cut(s)	136, 286, 483
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	2 cut(s)	414, 882
MslI	CAYNNNNRTG	1 cut(s)	816
MspI	CCGG	2 cut(s)	248, 584
MspR9I	CCNGG	2 cut(s)	585, 701
Mva1269I	GAATGC	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	701
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 169, 785
NciI	CCSGG	1 cut(s)	585
NcoI	CCATGG	1 cut(s)	608
NdeII	GATC	2 cut(s)	570, 655
NlaIII	CATG	5 cut(s)	201, 571, 612, 819, 837
NlaIV	GGNNCC	1 cut(s)	698
NmuCI	GTSAC	1 cut(s)	547
NruI	TCGCGA	1 cut(s)	291
PctI	GAATGC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	134, 230
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	174, 243, 333, 395
PpuMI	RGGWCCY	1 cut(s)	697
PsiI	TTATAA	1 cut(s)	683
Psp1406I	AACGTT	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	1 cut(s)	698
PspPI	GGNCC	2 cut(s)	181, 697
PspPPI	RGGWCCY	1 cut(s)	697
RruI	TCGCGA	1 cut(s)	291
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	816
SaqAI	TTAA	2 cut(s)	414, 882
SatI	GCNGC	4 cut(s)	173, 242, 332, 394
Sau3AI	GATC	2 cut(s)	570, 655
Sau96I	GGNCC	2 cut(s)	181, 697
ScrFI	CCNGG	2 cut(s)	585, 701
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	3 cut(s)	9, 354, 664
SinI	GGWCC	2 cut(s)	181, 697
SmiMI	CAYNNNNRTG	1 cut(s)	816
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	6 cut(s)	69, 79, 216, 252, 282, 678
SsiI	CCGC	1 cut(s)	332
SspI	AATATT	1 cut(s)	493
StyD4I	CCNGG	2 cut(s)	583, 699
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	3 cut(s)	185, 560, 879
TaiI	ACGT	2 cut(s)	305, 596
TaqI	TCGA	5 cut(s)	46, 188, 348, 573, 823
TasI	AATT	6 cut(s)	69, 79, 216, 252, 282, 678
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	2 cut(s)	134, 230
Tru1I	TTAA	2 cut(s)	414, 882
Tru9I	TTAA	2 cut(s)	414, 882
TscAI	CASTG	2 cut(s)	119, 556
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	3 cut(s)	172, 241, 393
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	4 cut(s)	417, 657, 762, 800
TspGWI	ACGGA	1 cut(s)	888
TspRI	CASTG	2 cut(s)	119, 556
VpaK11BI	GGWCC	2 cut(s)	181, 697
XapI	RAATTY	2 cut(s)	69, 282
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.