Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21025394 .. 21026026

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCGGGACATGTCGTATTAGTGTGTTGGTTGGAATACGAAATCGATCCTGGAAAGACAATTGATTCAATAACTGTACAATTTCAACTTCCTCCCTGCATTTTATCAGCTCATCTGAATTCGAATTATGGAACCGTGAACATTCTTGCTAACAAGACATGTTCATGGACGATAGGGAAGATTCCTAATGACAGAGCCCCTGCAATGTCTGGGACATTAGTGCTTGAAACAGGATTAGAGCGCCTTCACGTTTTTCCGACATTTCAAGTGGGTTTTAGGATCATGGGTGTTGCTCTCTCTGGCTTGCAAATAGATAAACTGGATTTGAAGAATCTACCAAAACCACCTTATAAGGGTTTTCGAGCTCTCACTCGAGCAGGGGAATTTGAAGTCAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008088 GO:0008089 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010970 GO:0016192 GO:0030705 GO:0046907 GO:0047496 GO:0048489 GO:0048490 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0097479 GO:0097480 GO:0098930 GO:0099003 GO:0099111 GO:0099514 GO:0099517 GO:0099518

KEGG Pathways

Metabolic & Signaling

ko04137 ko04139 ko04142 map04137 map04139 map04142

Pfam Domains

Protein Families

Adap_comp_sub

Protein Analysis

134

Amino Acids

14.69

Weight (kDa)

8.51

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	15 - 132	6.5e-19	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AclWI	GGATC	2 cut(s)	41, 287
AcsI	RAATTY	2 cut(s)	118, 383
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflIII	ACRYGT	2 cut(s)	10, 158
AgsI	TTSAA	6 cut(s)	69, 86, 227, 266, 328, 389
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	2 cut(s)	110, 365
AluI	AGCT	2 cut(s)	110, 365
Alw21I	GWGCWC	1 cut(s)	367
AlwI	GGATC	2 cut(s)	41, 287
Ama87I	CYCGRG	1 cut(s)	372
ApoI	RAATTY	2 cut(s)	118, 383
AspLEI	GCGC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	6
AsuII	TTCGAA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	372
BanII	GRGCYC	2 cut(s)	199, 367
Bbv12I	GWGCWC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	244
Bme1390I	CCNGG	2 cut(s)	6, 51
BmeT110I	CYCGRG	1 cut(s)	372
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	6, 51
Bpu14I	TTCGAA	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	6
Bsa29I	ATCGAT	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	21, 226
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	21, 226
BsoBI	CYCGRG	1 cut(s)	372
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	199, 367
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	46, 279
BspDI	ATCGAT	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	41, 287
BspT104I	TTCGAA	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	46, 279
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	76, 136
BstAUI	TGTACA	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	305
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	49, 282
BstMBI	GATC	2 cut(s)	46, 279
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	2 cut(s)	14, 162
BstSCI	CCNGG	2 cut(s)	4, 49
Bsu15I	ATCGAT	1 cut(s)	45
BsuTUI	ATCGAT	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	305
CfoI	GCGC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	4 cut(s)	11, 159, 165, 283
CviJI	RGCY	4 cut(s)	110, 197, 303, 365
CviKI_1	RGCY	4 cut(s)	110, 197, 303, 365
CviQI	GTAC	1 cut(s)	77
DpnI	GATC	2 cut(s)	48, 281
DpnII	GATC	2 cut(s)	46, 279
Ecl136II	GAGCTC	1 cut(s)	365
Eco24I	GRGCYC	2 cut(s)	199, 367
Eco53kI	GAGCTC	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	49
EcoT38I	GRGCYC	2 cut(s)	199, 367
FaeI	CATG	4 cut(s)	14, 162, 168, 286
FaiI	YATR	7 cut(s)	12, 129, 160, 166, 284, 351, 400
FaqI	GGGAC	2 cut(s)	21, 226
FatI	CATG	4 cut(s)	10, 158, 164, 282
FriOI	GRGCYC	2 cut(s)	199, 367
GlaI	GCGC	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	244
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	14, 162, 168, 286
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	65, 181, 331
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	117, 258
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	76, 136
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	99, 203, 307
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	14, 162, 168, 286
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	46, 279
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	48, 281
MboI	GATC	2 cut(s)	46, 279
MboII	GAAGA	2 cut(s)	190, 340
MfeI	CAATTG	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	199, 367
MluCI	AATT	5 cut(s)	60, 80, 118, 124, 383
MmeI	TCCRAC	2 cut(s)	12, 281
MnlI	CCTC	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	163
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	6, 51
MunI	CAATTG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	51
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	46, 279
NlaIII	CATG	4 cut(s)	14, 162, 168, 286
NlaIV	GGNNCC	1 cut(s)	133
NspI	RCATGY	2 cut(s)	14, 162
NspV	TTCGAA	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	372
PciI	ACATGT	2 cut(s)	10, 158
PfeI	GAWTC	3 cut(s)	65, 181, 331
PfoI	TCCNGGA	1 cut(s)	49
PscI	ACATGT	2 cut(s)	10, 158
PsiI	TTATAA	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	133
PspXI	VCTCGAGB	1 cut(s)	372
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	367
Sau3AI	GATC	2 cut(s)	46, 279
ScrFI	CCNGG	2 cut(s)	6, 51
SduI	GDGCHC	2 cut(s)	199, 367
SetI	ASST	5 cut(s)	112, 252, 349, 367, 398
Sfr274I	CTCGAG	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	5 cut(s)	60, 80, 118, 124, 383
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	4, 49
TaaI	ACNGT	2 cut(s)	76, 136
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	4 cut(s)	45, 122, 361, 373
TasI	AATT	5 cut(s)	60, 80, 118, 124, 383
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	3 cut(s)	65, 181, 331
TspDTI	ATGAA	1 cut(s)	153
XapI	RAATTY	2 cut(s)	118, 383
XceI	RCATGY	2 cut(s)	14, 162
XhoI	CTCGAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.