Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21378696 .. 21379593

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTCGTTGAGGCCGAACGCGAGGGCGGAGGTCCGCCGGAACAGGTACAAGGTGGCTGTGGACGCGGAGGAGGGGCGGCGTCGGAGGGAGGACAATATGGTGGATCGATCAGGAAGAACCGCAGAGAAGAGAGCCTCCAGAAGAAGCGCCGCGAGGGGCTTCAAACCCAGCAATTGCCCTCCAGTCTTCACTCCGCCGGTCTGGATAAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0030312 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

72

Amino Acids

8.23

Weight (kDa)

11.67

Isoelectric Point (pI)

100.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	20, 65, 152
AciI	CCGC	7 cut(s)	26, 34, 65, 76, 120, 150, 194
AclWI	GGATC	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	214
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	2 cut(s)	77, 150
BlsI	GCNGC	2 cut(s)	78, 151
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	178
BpmI	CTGGAG	2 cut(s)	121, 165
Bsa29I	ATCGAT	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	3 cut(s)	20, 65, 152
BshFI	GGCC	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	37, 197
BsnI	GGCC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	103, 107
BspACI	CCGC	7 cut(s)	26, 34, 65, 76, 120, 150, 194
BspANI	GGCC	1 cut(s)	13
BspDI	ATCGAT	1 cut(s)	106
BspFNI	CGCG	3 cut(s)	20, 65, 152
BspPI	GGATC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	196
BssMI	GATC	2 cut(s)	103, 107
BssNI	GRCGYC	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	79
BstFNI	CGCG	3 cut(s)	20, 65, 152
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	106, 110
BstMBI	GATC	2 cut(s)	103, 107
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstUI	CGCG	3 cut(s)	20, 65, 152
BstV2I	GAAGAC	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	13
BsuTUI	ATCGAT	1 cut(s)	106
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	106
CseI	GACGC	2 cut(s)	68, 71
Csp6I	GTAC	1 cut(s)	46
CviJI	RGCY	5 cut(s)	13, 56, 134, 159, 213
CviKI_1	RGCY	5 cut(s)	13, 56, 134, 159, 213
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	2 cut(s)	105, 109
DpnII	GATC	2 cut(s)	103, 107
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	3 cut(s)	23, 41, 183
Eco47I	GGWCC	1 cut(s)	31
FaiI	YATR	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	77, 150
Fsp4HI	GCNGC	2 cut(s)	77, 150
FspBI	CTAG	1 cut(s)	214
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	2 cut(s)	77, 150
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	2 cut(s)	121, 165
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	2 cut(s)	37, 197
HgaI	GACGC	2 cut(s)	68, 71
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HpaII	CCGG	2 cut(s)	37, 197
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	3 cut(s)	111, 138, 202
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	79
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	103, 107
LpnPI	CCDG	8 cut(s)	28, 50, 96, 151, 181, 187, 195, 210
MaeI	CTAG	1 cut(s)	214
MalI	GATC	2 cut(s)	105, 109
MboI	GATC	2 cut(s)	103, 107
MboII	GAAGA	4 cut(s)	126, 139, 153, 178
MfeI	CAATTG	1 cut(s)	172
MluCI	AATT	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	62
MspI	CCGG	2 cut(s)	37, 197
MunI	CAATTG	1 cut(s)	172
MvnI	CGCG	3 cut(s)	20, 65, 152
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	103, 107
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	78, 151
PspFI	CCCAGC	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SatI	GCNGC	2 cut(s)	77, 150
Sau3AI	GATC	2 cut(s)	103, 107
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	4 cut(s)	33, 47, 54, 215
SinI	GGWCC	1 cut(s)	31
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	7 cut(s)	26, 34, 65, 76, 120, 150, 194
SspMI	CTAG	1 cut(s)	214
TaqI	TCGA	1 cut(s)	106
TasI	AATT	1 cut(s)	172
TauI	GCSGC	2 cut(s)	79, 152
VpaK11BI	GGWCC	1 cut(s)	31
XspI	CTAG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.