Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21713166 .. 21713837

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAGTGGGGAAGTATTGGCAATAAGAGATAAGTTGATGTATCTTCCTTGTGGGCTTGCTGCAGGTTCTTCTATTACGGTGTTGGGGTCATCCCATTATGCTCATGAGAAGTATGTGTCCCAGCTTGCAAAGTTGAGGTGGGGTGATGGAACAATTATGGTCTCGCAGTTCATGGATGAGTTGCAAACCCATGGAGGACAACCATGTGATAATTTGGGCAGAGAACTCTTCTGGGAAAAGCAACCACATATGATGCAATTAGGAGAAGATTATGCAGAACGTATGTTGTCTAAGTTCTTGGACTTGATTATTCGTGGAAACTTTGAGTTTCAGACTGCCACTTTGTTGCAGCTGCTCAAGCCTTTGTGGAACATTGTTCGGATTAGGGATGAATTAACCCCTATAGACTATATCCAAGTTGCTAGCAGCGATAAGTTTCTGAGTTGGGTTGACCATCCTTTTCCTGATATATATTCTTGTGGGAGTATCTTTCAAATTACCATTCTTCCTCCGACGCTTGGTCCATTTCTGAGTAGGCTAGACCATTCTTTGAAGGGATTCATTTGGAGGACACTTTTTGTTGAGCTTTTTGTAAGTAAATTACAAGGAAGGTCTGCTACTTTTCACCAATATGCTACAAGTATACCACCAATTGCCTTTGCCATTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0005937 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006544 GO:0006563 GO:0006725 GO:0006730 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009059 GO:0009069 GO:0009070 GO:0009328 GO:0009987 GO:0010467 GO:0016020 GO:0016053 GO:0016070 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019538 GO:0019752 GO:0030427 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042133 GO:0042995 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043332 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0046394 GO:0046483 GO:0051286 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0090304 GO:0120025 GO:0120038 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko00970 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 ko03010 map00260 map00460 map00630 map00670 map00680 map00970 map01100 map01110 map01120 map01130 map01200 map01230 map01523 map03010

Pfam Domains

Protein Families

B3_4 B5 SHMT tRNA-synt_2d

Protein Analysis

224

Amino Acids

25.36

Weight (kDa)

6.15

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	643
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	494, 553
AhdI	GACNNNNNGTC	1 cut(s)	519
AluBI	AGCT	3 cut(s)	124, 352, 586
AluI	AGCT	3 cut(s)	124, 352, 586
Alw26I	GTCTC	1 cut(s)	166
ApeKI	GCWGC	4 cut(s)	59, 349, 352, 426
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
Asp700I	GAANNNNTTC	1 cut(s)	557
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	155, 617
AsuNHI	GCTAGC	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	521
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BbvI	GCAGC	4 cut(s)	46, 339, 361, 438
BccI	CCATC	2 cut(s)	140, 462
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	3 cut(s)	423, 539, 670
BfmI	CTRYAG	2 cut(s)	60, 402
BfuAI	ACCTGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	60, 350, 353, 427
BlsI	GCNGC	4 cut(s)	61, 351, 354, 428
Bme18I	GGWCC	1 cut(s)	521
BmeRI	GACNNNNNGTC	1 cut(s)	519
BmgT120I	GGNCC	1 cut(s)	521
BmsI	GCATC	1 cut(s)	243
BmtI	GCTAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	4 cut(s)	89, 181, 394, 454
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMII	CTCAG	2 cut(s)	431, 521
BseXI	GCAGC	4 cut(s)	46, 339, 361, 438
BseYI	CCCAGC	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	103
Bso31I	GGTCTC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	432, 522
BspHI	TCATGA	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	426
BspTNI	GGTCTC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	190
BssNAI	GTATAC	1 cut(s)	644
BssT1I	CCWWGG	1 cut(s)	190
Bst1107I	GTATAC	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	57, 126, 424
BstDEI	CTNAG	3 cut(s)	291, 440, 530
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	4 cut(s)	89, 181, 394, 454
BstMAI	GTCTC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstSFI	CTRYAG	2 cut(s)	60, 402
BstV1I	GCAGC	4 cut(s)	46, 339, 361, 438
BstZ17I	GTATAC	1 cut(s)	644
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	4 cut(s)	89, 181, 394, 454
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	3 cut(s)	57, 126, 424
CciI	TCATGA	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	521
CseI	GACGC	1 cut(s)	523
CviAII	CATG	4 cut(s)	104, 172, 191, 204
CviJI	RGCY	6 cut(s)	55, 124, 352, 361, 538, 586
CviKI_1	RGCY	6 cut(s)	55, 124, 352, 361, 538, 586
DdeI	CTNAG	3 cut(s)	291, 440, 530
DriI	GACNNNNNGTC	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	233
Eam1105I	GACNNNNNGTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	4 cut(s)	107, 175, 194, 207
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	4 cut(s)	103, 171, 190, 203
FauNDI	CATATG	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	643
Fnu4HI	GCNGC	4 cut(s)	60, 350, 353, 427
FokI	GGATG	4 cut(s)	76, 188, 401, 441
Fsp4HI	GCNGC	4 cut(s)	60, 350, 353, 427
FspBI	CTAG	3 cut(s)	423, 539, 670
GluI	GCNGC	4 cut(s)	60, 350, 353, 427
GsaI	CCCAGC	1 cut(s)	124
HgaI	GACGC	1 cut(s)	523
Hin1II	CATG	4 cut(s)	107, 175, 194, 207
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	1 cut(s)	558
HphI	GGTGA	2 cut(s)	155, 617
Hpy166II	GTNNAC	2 cut(s)	451, 644
Hpy188I	TCNGA	5 cut(s)	333, 381, 441, 513, 531
Hpy188III	TCNNGA	2 cut(s)	104, 464
Hpy8I	GTNNAC	2 cut(s)	451, 644
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	2 cut(s)	547, 603
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	6 cut(s)	62, 128, 184, 256, 275, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	3 cut(s)	291, 440, 530
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	4 cut(s)	107, 175, 194, 207
LpnPI	CCDG	4 cut(s)	48, 134, 217, 477
Lsp1109I	GCAGC	4 cut(s)	46, 339, 361, 438
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	3 cut(s)	423, 539, 670
MaeII	ACGT	1 cut(s)	280
MboII	GAAGA	5 cut(s)	35, 60, 220, 278, 497
MfeI	CAATTG	1 cut(s)	651
MluCI	AATT	7 cut(s)	153, 211, 257, 392, 495, 599, 651
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	4 cut(s)	129, 188, 519, 561
MroXI	GAANNNNTTC	1 cut(s)	557
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	651
MwoI	GCNNNNNNNGC	1 cut(s)	358
NcoI	CCATGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	249
NheI	GCTAGC	1 cut(s)	422
NlaIII	CATG	4 cut(s)	107, 175, 194, 207
PagI	TCATGA	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	558
PkrI	GCNGC	4 cut(s)	61, 351, 354, 428
PspFI	CCCAGC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	521
PstI	CTGCAG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	4 cut(s)	60, 350, 353, 427
Sau96I	GGNCC	1 cut(s)	521
SetI	ASST	7 cut(s)	67, 126, 140, 283, 354, 588, 614
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	2 cut(s)	60, 402
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	7 cut(s)	153, 211, 257, 392, 495, 599, 651
SspMI	CTAG	3 cut(s)	423, 539, 670
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	283
TasI	AATT	7 cut(s)	153, 211, 257, 392, 495, 599, 651
TfiI	GAWTC	1 cut(s)	558
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TseI	GCWGC	4 cut(s)	59, 349, 352, 426
TspDTI	ATGAA	3 cut(s)	160, 405, 550
VpaK11BI	GGWCC	1 cut(s)	521
XmiI	GTMKAC	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	557
XspI	CTAG	3 cut(s)	423, 539, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.