pycom12g20250

Putative S-adenosyl-L-methionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
21826903 .. 21828128
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGGGGAGTTTTGTGGATTTTGTGAGTTGGATATTGGGTTTAGAAGATATGTTAAGTTTATGCACAGGAAGATTGATTTGGCTTCAGTTTGGTCATGGAGATTCTTCATCTGACCGTTGTTTTAATTGTGTGGTAAGGTGGTGTCATCCGAAATGTAGGCTGCGTAAATTAATGGGTTGGATTCAGATGCTATTGGGAGGCCTTGTTATAATTTTCAGCATATGCAGTCTGTTCAAGTTCTACTCTGCAGGCTTTTTCTTTCACAATGAAGACATATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.74

Weight (kDa)

7.63

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 160
AseI ATTAAT 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmsI GCATC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
BseGI GGATG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 201
BsnI GGCC 1 cut(s) 201
BspANI GGCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 250
BstF5I GGATG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 276
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 250
CviAII CATG 1 cut(s) 95
CviJI RGCY 4 cut(s) 82, 160, 201, 252
CviKI_1 RGCY 4 cut(s) 82, 160, 201, 252
Eco147I AGGCCT 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 68
FaeI CATG 1 cut(s) 98
FaiI YATR 7 cut(s) 50, 61, 96, 209, 221, 223, 275
FatI CATG 1 cut(s) 94
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
HaeIII GGCC 1 cut(s) 201
Hin1II CATG 1 cut(s) 98
HinfI GANTC 2 cut(s) 101, 181
Hpy188I TCNGA 3 cut(s) 112, 150, 186
Hpy188III TCNNGA 1 cut(s) 279
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 63, 225, 248
Hsp92II CATG 1 cut(s) 98
LpnPI CCDG 2 cut(s) 51, 234
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 177
MboII GAAGA 4 cut(s) 56, 81, 96, 281
MluCI AATT 3 cut(s) 124, 167, 210
MmeI TCCRAC 2 cut(s) 8, 158
MnlI CCTC 1 cut(s) 191
MseI TTAA 3 cut(s) 53, 123, 170
NdeI CATATG 1 cut(s) 221
NlaIII CATG 1 cut(s) 98
PceI AGGCCT 1 cut(s) 201
PfeI GAWTC 2 cut(s) 101, 181
PkrI GCNGC 1 cut(s) 162
PshBI ATTAAT 1 cut(s) 170
PsiI TTATAA 1 cut(s) 209
PstI CTGCAG 1 cut(s) 250
SaqAI TTAA 3 cut(s) 53, 123, 170
SatI GCNGC 1 cut(s) 161
SetI ASST 1 cut(s) 140
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 246
SgeI CNNG 5 cut(s) 78, 107, 215, 247, 261
Sse9I AATT 3 cut(s) 124, 167, 210
SseBI AGGCCT 1 cut(s) 201
StuI AGGCCT 1 cut(s) 201
TaaI ACNGT 1 cut(s) 116
TasI AATT 3 cut(s) 124, 167, 210
TfiI GAWTC 2 cut(s) 101, 181
Tru1I TTAA 3 cut(s) 53, 123, 170
Tru9I TTAA 3 cut(s) 53, 123, 170
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 96, 282
VspI ATTAAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.