Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21945215 .. 21945663

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTTATCTTTGCTTTAATTTTCCCATATCATCTTTACCGACGGTACCTCACTGACATAACTAGGACCGTACATTTTGGTGAACCTACCTCGCGACAAAAAGAATGCTTTACCCGAGTTTTTCAGGGTCATATAGCTCTTGATGAGGCAGCATTCCATGAAAACACGCCCAGTTTTGTGTTAGATGCATTTGCTCGATCTTCCCTTTGGAAGATAGGACTGGATTTTCGACACGGTTTTTTTCTTGAATTTCTATCAAATTATCATAAACTTTTTCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Creatinase_N Creatinase_N_2 Peptidase_M24 Peptidase_M24_C

Protein Analysis

95

Amino Acids

11.27

Weight (kDa)

7.98

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	13 - 80	1e-09	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccII	CGCG	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	2 cut(s)	47, 72
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	248
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
Asp718I	GGTACC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	171, 225
BseNI	ACTGG	2 cut(s)	171, 225
BseXI	GCAGC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	114
BsmI	GAATGC	2 cut(s)	110, 152
BsoBI	CYCGRG	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	197
Bsp68I	TCGCGA	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	171, 225
BssMI	GATC	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	45, 70, 236
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	197
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	51
BtuMI	TCGCGA	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	46, 71
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	1 cut(s)	137
CviKI_1	RGCY	1 cut(s)	137
CviQI	GTAC	2 cut(s)	46, 71
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	190
FaeI	CATG	1 cut(s)	161
FaiI	YATR	6 cut(s)	28, 59, 132, 134, 159, 267
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	3 cut(s)	93, 140, 245
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	1 cut(s)	45
HpyCH4III	ACNGT	3 cut(s)	45, 70, 236
HpyCH4V	TGCA	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	197
LpnPI	CCDG	3 cut(s)	110, 184, 206
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	63
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	2 cut(s)	192, 223
MluCI	AATT	3 cut(s)	18, 248, 259
MnlI	CCTC	3 cut(s)	59, 100, 139
Mph1103I	ATGCAT	1 cut(s)	190
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	110, 152
MvnI	CGCG	1 cut(s)	94
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	47
NruI	TCGCGA	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	190
PctI	GAATGC	2 cut(s)	110, 152
PkrI	GCNGC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	66
RruI	TCGCGA	1 cut(s)	94
RsaI	GTAC	2 cut(s)	47, 72
RsaNI	GTAC	2 cut(s)	46, 71
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	66
SetI	ASST	4 cut(s)	51, 88, 92, 139
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	3 cut(s)	18, 248, 259
SspMI	CTAG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	45, 70, 236
TaqI	TCGA	2 cut(s)	196, 229
TasI	AATT	3 cut(s)	18, 248, 259
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	248
XspI	CTAG	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.