Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22196701 .. 22198995

Gene Structure 2295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAAGTTAACACCACAACAGTTGCATCCTCAGGGCCATTTGACCTTGCCGGAAAAAACCATACTAACAAACACCACCTTTCAAATTCTCAGCTCTACCACCACCACCACCATGGATTCTTTCTTTCAAAATCTGCTCTCATTGTCATCATACCTACCATCTCAGTTATGGTCATTCTTTCTATAATCTTCGTCTTATTAATGCTTCGACGGCTCGCCAAGTCCACGAAAACAAATGGTAACATTTACAAAGAGACGAGCTTGATTAATACAAGAAGCAGGTTCATTGCTCAAGCCACAATGGACTTAAATTCTAGCCCAGATGTGAAAGGTGGGTGTCTCCAAGGAGGGAATTCTGGGAGGTCATTTAGGTCACCTGCACTGACAACACCAAGTAGATACAAAGGAGTCCAAGTGTTCTCATACAAAGAACTCGAGGAAGCCACTGATAAATTCAGCGAGGCAAATGTGATAGGGCATGGTGGGTTTGGAGTGGTGTATAAGGGGGTCCTAAGAGATGGGACAGTGGCAACAATTAAGATGCTGCGGAGGGAAGGCAGGCAAGGGGAGCGTGCCTTTAGGGTTGAGGTTGATCTGCTAAGCCGGTTGCACTCTCCATACTTGGTGGAGCTACTTGGCTATTGTGCTGACCAGCACCATAGGCTCCTCATATTTGAATGCATGCCCCATGGTACTCTGCAACGCCATCTGCATCCTACAAACAATCATCAGCCGTTGGATTGGGGGACCCGATTGAGGATAGCCCTTGATTGTGCCAAGGCCCTTGAGTTCCTCCATGAACATGCCACCCCATCTGTTATACACCAAGACTTCAAGTGCACCAATGTTCTACTAGATCGAACAGGGGCACTTTTGTGCCAAGGTGTCGGATTTCGGATTGGCCAAGGTGGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

306

Amino Acids

33.95

Weight (kDa)

9.44

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	153 - 290	7.5e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	156 - 289	2.6e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	2 cut(s)	270, 385
AciI	CCGC	1 cut(s)	547
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	4 cut(s)	85, 310, 352, 452
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	1 cut(s)	756
AgsI	TTSAA	4 cut(s)	84, 129, 677, 835
AleI	CACNNNNGTG	1 cut(s)	874
AluBI	AGCT	3 cut(s)	94, 261, 631
AluI	AGCT	3 cut(s)	94, 261, 631
Alw21I	GWGCWC	1 cut(s)	842
Alw26I	GTCTC	2 cut(s)	248, 344
Alw44I	GTGCAC	1 cut(s)	838
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	35, 780, 901
ApaLI	GTGCAC	1 cut(s)	838
ApeKI	GCWGC	1 cut(s)	544
ApoI	RAATTY	4 cut(s)	85, 310, 352, 452
AseI	ATTAAT	2 cut(s)	200, 267
AspS9I	GGNCC	4 cut(s)	35, 508, 747, 781
AsuHPI	GGTGA	1 cut(s)	366
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	508, 747
AxyI	CCTNAGG	1 cut(s)	31
BaeGI	GKGCMC	2 cut(s)	842, 871
BalI	TGGCCA	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	4 cut(s)	167, 512, 714, 820
BceAI	ACGGC	2 cut(s)	227, 718
BcoDI	GTCTC	2 cut(s)	248, 344
BfaI	CTAG	2 cut(s)	315, 854
BfuAI	ACCTGC	2 cut(s)	270, 385
BisI	GCNGC	1 cut(s)	545
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	1 cut(s)	546
Bme18I	GGWCC	2 cut(s)	508, 747
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	4 cut(s)	35, 508, 747, 781
BmiI	GGNNCC	4 cut(s)	509, 665, 748, 749
BmsI	GCATC	3 cut(s)	35, 531, 721
Bpu1102I	GCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	276, 806
BsaJI	CCNNGG	6 cut(s)	112, 343, 688, 777, 880, 904
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	756
Bse118I	RCCGGY	1 cut(s)	603
Bse21I	CCTNAGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	6 cut(s)	112, 343, 688, 777, 880, 904
BseGI	GGATG	2 cut(s)	26, 712
BseLI	CCNNNNNNNGG	1 cut(s)	756
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	45, 104, 177
BseRI	GAGGAG	1 cut(s)	656
BseSI	GKGCMC	2 cut(s)	842, 871
BseXI	GCAGC	1 cut(s)	531
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	37, 782, 903
BsiHKAI	GWGCWC	1 cut(s)	842
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	51, 604
BslFI	GGGAC	2 cut(s)	535, 760
BslI	CCNNNNNNNGG	1 cut(s)	756
BsmAI	GTCTC	2 cut(s)	248, 344
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	535, 760
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	3 cut(s)	37, 782, 903
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	842, 871
Bsp143I	GATC	2 cut(s)	592, 856
Bsp1720I	GCTNAGC	1 cut(s)	599
Bsp19I	CCATGG	2 cut(s)	112, 688
BspACI	CCGC	1 cut(s)	547
BspANI	GGCC	3 cut(s)	37, 782, 903
BspCNI	CTCAG	3 cut(s)	44, 103, 176
BspLI	GGNNCC	4 cut(s)	509, 665, 748, 749
BspMI	ACCTGC	2 cut(s)	270, 385
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	603
BssAI	RCCGGY	1 cut(s)	603
BssECI	CCNNGG	6 cut(s)	112, 343, 688, 777, 880, 904
BssMI	GATC	2 cut(s)	592, 856
BssT1I	CCWWGG	6 cut(s)	112, 343, 688, 777, 880, 904
Bst4CI	ACNGT	2 cut(s)	22, 526
BstC8I	GCNNGC	4 cut(s)	216, 560, 573, 683
BstDEI	CTNAG	5 cut(s)	31, 90, 163, 512, 599
BstDSI	CCRYGG	2 cut(s)	112, 688
BstEII	GGTNACC	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	26, 712
BstKTI	GATC	2 cut(s)	595, 859
BstMAI	GTCTC	2 cut(s)	248, 344
BstMBI	GATC	2 cut(s)	592, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 568, 661
BstNSI	RCATGY	2 cut(s)	685, 806
BstPI	GGTNACC	1 cut(s)	372
BstSLI	GKGCMC	2 cut(s)	842, 871
BstV1I	GCAGC	1 cut(s)	531
BstXI	CCANNNNNNTGG	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	37, 782, 903
BtgI	CCRYGG	2 cut(s)	112, 688
BtsCI	GGATG	2 cut(s)	26, 712
BtsIMutI	CAGTG	3 cut(s)	380, 444, 531
BveI	ACCTGC	2 cut(s)	270, 385
Cac8I	GCNNGC	4 cut(s)	216, 560, 573, 683
Cfr10I	RCCGGY	1 cut(s)	603
Cfr13I	GGNCC	4 cut(s)	35, 508, 747, 781
Csp6I	GTAC	1 cut(s)	693
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	6 cut(s)	113, 479, 682, 689, 797, 803
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	5 cut(s)	31, 90, 163, 512, 599
DpnI	GATC	2 cut(s)	594, 858
DpnII	GATC	2 cut(s)	592, 856
EaeI	YGGCCR	1 cut(s)	901
Eco130I	CCWWGG	6 cut(s)	112, 343, 688, 777, 880, 904
Eco47I	GGWCC	2 cut(s)	508, 747
Eco81I	CCTNAGG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	372
EcoO109I	RGGNCCY	3 cut(s)	508, 747, 781
EcoO65I	GGTNACC	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	352
EcoT14I	CCWWGG	6 cut(s)	112, 343, 688, 777, 880, 904
EcoT22I	ATGCAT	1 cut(s)	683
ErhI	CCWWGG	6 cut(s)	112, 343, 688, 777, 880, 904
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	6 cut(s)	116, 482, 685, 692, 800, 806
FaqI	GGGAC	2 cut(s)	535, 760
FatI	CATG	6 cut(s)	112, 478, 681, 688, 796, 802
Fnu4HI	GCNGC	1 cut(s)	545
FokI	GGATG	2 cut(s)	13, 699
Fsp4HI	GCNGC	1 cut(s)	545
FspBI	CTAG	2 cut(s)	315, 854
GluI	GCNGC	1 cut(s)	545
HaeIII	GGCC	3 cut(s)	37, 782, 903
HapII	CCGG	2 cut(s)	51, 604
Hin1II	CATG	6 cut(s)	116, 482, 685, 692, 800, 806
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	117, 408
HpaI	GTTAAC	1 cut(s)	10
HpaII	CCGG	2 cut(s)	51, 604
HphI	GGTGA	1 cut(s)	366
Hpy166II	GTNNAC	3 cut(s)	10, 225, 840
Hpy188I	TCNGA	3 cut(s)	890, 897, 917
Hpy8I	GTNNAC	3 cut(s)	10, 225, 840
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	548
HpyCH4III	ACNGT	2 cut(s)	22, 526
HpyCH4V	TGCA	7 cut(s)	26, 380, 610, 681, 700, 712, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 568, 661
HpyF3I	CTNAG	5 cut(s)	31, 90, 163, 512, 599
Hsp92II	CATG	6 cut(s)	116, 482, 685, 692, 800, 806
KflI	GGGWCCC	1 cut(s)	747
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	592, 856
LmnI	GCTCC	3 cut(s)	568, 628, 669
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	3 cut(s)	35, 531, 721
MaeI	CTAG	2 cut(s)	315, 854
MaeIII	GTNAC	2 cut(s)	239, 372
MalI	GATC	2 cut(s)	594, 858
MboI	GATC	2 cut(s)	592, 856
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	842, 871
MlsI	TGGCCA	1 cut(s)	903
MluCI	AATT	5 cut(s)	85, 310, 352, 452, 534
MluNI	TGGCCA	1 cut(s)	903
MlyI	GAGTC	1 cut(s)	417
MmeI	TCCRAC	2 cut(s)	717, 868
Mox20I	TGGCCA	1 cut(s)	903
Mph1103I	ATGCAT	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	903
MseI	TTAA	5 cut(s)	9, 200, 267, 308, 537
MslI	CAYNNNNRTG	3 cut(s)	111, 801, 874
Msp20I	TGGCCA	1 cut(s)	903
MspI	CCGG	2 cut(s)	51, 604
Mva1269I	GAATGC	1 cut(s)	683
MwoI	GCNNNNNNNGC	3 cut(s)	211, 568, 661
NcoI	CCATGG	2 cut(s)	112, 688
NdeII	GATC	2 cut(s)	592, 856
NlaIII	CATG	6 cut(s)	116, 482, 685, 692, 800, 806
NlaIV	GGNNCC	4 cut(s)	509, 665, 748, 749
NmuCI	GTSAC	1 cut(s)	372
NsiI	ATGCAT	1 cut(s)	683
NspI	RCATGY	2 cut(s)	685, 806
OliI	CACNNNNGTG	1 cut(s)	874
PaeI	GCATGC	1 cut(s)	685
PaeR7I	CTCGAG	1 cut(s)	434
PaqCI	CACCTGC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	546
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PpuMI	RGGWCCY	2 cut(s)	508, 747
PshBI	ATTAAT	2 cut(s)	200, 267
Psp5II	RGGWCCY	2 cut(s)	508, 747
PspEI	GGTNACC	1 cut(s)	372
PspN4I	GGNNCC	4 cut(s)	509, 665, 748, 749
PspPI	GGNCC	4 cut(s)	35, 508, 747, 781
PspPPI	RGGWCCY	2 cut(s)	508, 747
PspXI	VCTCGAGB	1 cut(s)	434
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
RseI	CAYNNNNRTG	3 cut(s)	111, 801, 874
SaqAI	TTAA	5 cut(s)	9, 200, 267, 308, 537
SatI	GCNGC	1 cut(s)	545
Sau3AI	GATC	2 cut(s)	592, 856
Sau96I	GGNCC	4 cut(s)	35, 508, 747, 781
SchI	GAGTC	1 cut(s)	417
SduI	GDGCHC	2 cut(s)	842, 871
SfaNI	GCATC	3 cut(s)	35, 531, 721
Sfr274I	CTCGAG	1 cut(s)	434
SinI	GGWCC	2 cut(s)	508, 747
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	3 cut(s)	111, 801, 874
SmlI	CTYRAG	3 cut(s)	291, 434, 785
SmoI	CTYRAG	3 cut(s)	291, 434, 785
SphI	GCATGC	1 cut(s)	685
Sse9I	AATT	5 cut(s)	85, 310, 352, 452, 534
SsiI	CCGC	1 cut(s)	547
SspMI	CTAG	2 cut(s)	315, 854
StyI	CCWWGG	6 cut(s)	112, 343, 688, 777, 880, 904
TaaI	ACNGT	2 cut(s)	22, 526
TaqI	TCGA	3 cut(s)	208, 435, 859
TasI	AATT	5 cut(s)	85, 310, 352, 452, 534
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	5 cut(s)	9, 200, 267, 308, 537
Tru9I	TTAA	5 cut(s)	9, 200, 267, 308, 537
TscAI	CASTG	3 cut(s)	387, 451, 531
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	2 cut(s)	274, 813
TspRI	CASTG	3 cut(s)	387, 451, 531
VneI	GTGCAC	1 cut(s)	838
VpaK11BI	GGWCC	2 cut(s)	508, 747
VspI	ATTAAT	2 cut(s)	200, 267
XapI	RAATTY	4 cut(s)	85, 310, 352, 452
XceI	RCATGY	2 cut(s)	685, 806
XcmI	CCANNNNNNNNNTGG	2 cut(s)	110, 166
XhoI	CTCGAG	1 cut(s)	434
XspI	CTAG	2 cut(s)	315, 854
Zsp2I	ATGCAT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.