Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22335959 .. 22336540

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCTGAATCGTGAGGGGGTGGTGGGTTCCCTTATCATGATCCAGCCCACGCTTTTCCAATACTCCTTTGATGGTCCACCTGTTCCAGTCCTCCTAGATGTTCGCTCCATCTCTCCAGATGTTATCTTGCTCTTTGACTCATACTTTCACGTGGTTATTCATTACGGGTCCAAAGTTGCTCAGTGGAGGAAGCTTGGGTATGACAAGGACCCAAACCATGAGAATTTGAGGAAGCTGTTGGAAGCCCCGGAAATTGATGCAGAGCAGTTGATGGCTGACCGAGTTCCTGCACCAAAGTTTATTAAATGTGACCAGCATGGCAGCCAAGCGAGGTTTCTTCTTGCAAAGTTGAATCCATCTGTTACCCAGAATTCAACACACACTGACGGTTCAGATATTATTTTCACCGATCGATCTGAGCTTGCAGGTATTTTTAGATCACTTGCAGGTCCTTGCAGTGCAAGGCTGATGAAGAGGAGCACTTTATATGGATTTTCGATTTTCTCGTCATACAAAGGTATTTTTGTGTATAGTTTTGAAGAGAAAAAGGTGTCTAGTTGTATTAACCCACTGTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001501 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0008270 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009888 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022607 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0034622 GO:0035107 GO:0035138 GO:0035459 GO:0043009 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046907 GO:0046914 GO:0048193 GO:0048194 GO:0048475 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048731 GO:0048736 GO:0048856 GO:0051179 GO:0051216 GO:0051234 GO:0051641 GO:0051649 GO:0051668 GO:0061024 GO:0061448 GO:0065003 GO:0070971 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1904888

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

194

Amino Acids

21.72

Weight (kDa)

7.69

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gelsolin	PF00626	27 - 113	4.4e-10	Gelsolin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	416, 437
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	223, 370
AcvI	CACGTG	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	352, 375, 539
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	3 cut(s)	193, 235, 421
AluI	AGCT	3 cut(s)	193, 235, 421
Alw21I	GWGCWC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	2 cut(s)	223, 370
AspS9I	GGNCC	4 cut(s)	74, 168, 208, 449
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	4 cut(s)	74, 168, 208, 449
BbrPI	CACGTG	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	333
BccI	CCATC	4 cut(s)	65, 116, 265, 364
BcnI	CCSGG	1 cut(s)	248
BfaI	CTAG	2 cut(s)	95, 555
BfuAI	ACCTGC	2 cut(s)	416, 437
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	4 cut(s)	74, 168, 208, 449
BmgT120I	GGNCC	4 cut(s)	74, 168, 208, 449
BmiI	GGNNCC	3 cut(s)	28, 169, 210
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	412
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	194, 408
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	1 cut(s)	333
BsgI	GTGCAG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	4 cut(s)	39, 409, 413, 437
BspCNI	CTCAG	2 cut(s)	193, 409
BspDI	ATCGAT	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	28, 169, 210
BspMI	ACCTGC	2 cut(s)	416, 437
BspPI	GGATC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	4 cut(s)	39, 409, 413, 437
Bst4CI	ACNGT	2 cut(s)	389, 573
Bst6I	CTCTTC	2 cut(s)	467, 534
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	180, 417
BstKTI	GATC	4 cut(s)	42, 412, 416, 440
BstMBI	GATC	4 cut(s)	39, 409, 413, 437
BstMCI	CGRYCG	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	412
BsuTUI	ATCGAT	1 cut(s)	412
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	4 cut(s)	188, 381, 463, 569
BveI	ACCTGC	2 cut(s)	416, 437
Cac8I	GCNNGC	1 cut(s)	423
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	4 cut(s)	74, 168, 208, 449
ClaI	ATCGAT	1 cut(s)	412
CviAII	CATG	3 cut(s)	37, 218, 317
CviJI	RGCY	8 cut(s)	46, 193, 235, 245, 275, 324, 421, 466
CviKI_1	RGCY	8 cut(s)	46, 193, 235, 245, 275, 324, 421, 466
DdeI	CTNAG	2 cut(s)	180, 417
DpnI	GATC	4 cut(s)	41, 411, 415, 439
DpnII	GATC	4 cut(s)	39, 409, 413, 437
Eam1104I	CTCTTC	2 cut(s)	467, 534
EarI	CTCTTC	2 cut(s)	467, 534
Eco47I	GGWCC	4 cut(s)	74, 168, 208, 449
Eco72I	CACGTG	1 cut(s)	151
EcoO109I	RGGNCCY	2 cut(s)	208, 449
EcoRI	GAATTC	1 cut(s)	370
FaeI	CATG	3 cut(s)	40, 221, 320
FaiI	YATR	9 cut(s)	38, 142, 201, 219, 318, 487, 489, 511, 531
FatI	CATG	3 cut(s)	36, 217, 316
Fnu4HI	GCNGC	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	2 cut(s)	95, 555
GluI	GCNGC	1 cut(s)	322
GsuI	CTGGAG	1 cut(s)	99
HapII	CCGG	1 cut(s)	248
Hin1II	CATG	3 cut(s)	40, 221, 320
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	3 cut(s)	7, 137, 352
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	394, 418
Hpy188III	TCNNGA	3 cut(s)	11, 37, 116
Hpy8I	GTNNAC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	389, 573
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	7 cut(s)	260, 290, 344, 425, 446, 456, 461
HpyF3I	CTNAG	2 cut(s)	180, 417
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	40, 221, 320
Kzo9I	GATC	4 cut(s)	39, 409, 413, 437
LmnI	GCTCC	2 cut(s)	110, 477
Lsp1109I	GCAGC	1 cut(s)	333
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	95, 555
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	308, 361
MalI	GATC	4 cut(s)	41, 411, 415, 439
MboI	GATC	4 cut(s)	39, 409, 413, 437
MboII	GAAGA	3 cut(s)	329, 484, 551
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	3 cut(s)	223, 252, 370
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	6 cut(s)	7, 101, 180, 222, 324, 468
MseI	TTAA	2 cut(s)	303, 564
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	248
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	4 cut(s)	39, 409, 413, 437
NlaIII	CATG	3 cut(s)	40, 221, 320
NlaIV	GGNNCC	3 cut(s)	28, 169, 210
NmuCI	GTSAC	1 cut(s)	308
PagI	TCATGA	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	7, 352
PkrI	GCNGC	1 cut(s)	323
Ple19I	CGATCG	1 cut(s)	412
PleI	GAGTC	1 cut(s)	131
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	151
PpuMI	RGGWCCY	2 cut(s)	208, 449
Psp5II	RGGWCCY	2 cut(s)	208, 449
PspCI	CACGTG	1 cut(s)	151
PspN4I	GGNNCC	3 cut(s)	28, 169, 210
PspPI	GGNCC	4 cut(s)	74, 168, 208, 449
PspPPI	RGGWCCY	2 cut(s)	208, 449
PvuI	CGATCG	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	303, 564
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	4 cut(s)	39, 409, 413, 437
Sau96I	GGNCC	4 cut(s)	74, 168, 208, 449
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	482
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	4 cut(s)	74, 168, 208, 449
Sse9I	AATT	3 cut(s)	223, 252, 370
SspMI	CTAG	2 cut(s)	95, 555
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	389, 573
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	412, 497
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	223, 252, 370
TfiI	GAWTC	2 cut(s)	7, 352
Tru1I	TTAA	2 cut(s)	303, 564
Tru9I	TTAA	2 cut(s)	303, 564
TscAI	CASTG	4 cut(s)	188, 388, 463, 576
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	149, 485
TspRI	CASTG	4 cut(s)	188, 388, 463, 576
VpaK11BI	GGWCC	4 cut(s)	74, 168, 208, 449
XapI	RAATTY	2 cut(s)	223, 370
XspI	CTAG	2 cut(s)	95, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.