Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22424318 .. 22424698

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTTTGGTGGGCAGGAGCGGACTGAATCCGAGATGCGATTGGATGGGAAATACTTTGTCACCATCCAAGACCGGGACTGGTACTGGAGAGCTTTACTCCCTGAGGGAGAAGATAGGGACCATCCAGCATGTAACCCATTTGGTCCCCGGGGTCAAAGCCTCGAAGCTGTCAAGTTCCCGAAGAGCCTTGTTGTGGTGGCTGGTTTGGATCTTGTTCAGGACTGGCAATTGGCTTATGCTAGAGGGCTCGAGAGGGCTGGCATTAACATGAAACTCATGTATCTTGAGCAGGCCACAATTGGTTTCTACCTGTTGCCGAATAATGAGCATTTCTACACCGTGATGGATGAGATCAGTAAATTCGTGTGCTCCAACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

127

Amino Acids

14.61

Weight (kDa)

4.97

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_3	PF07859	7 - 103	1e-16	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	19
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	73, 193
AluBI	AGCT	2 cut(s)	92, 167
AluI	AGCT	2 cut(s)	92, 167
Alw21I	GWGCWC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	2 cut(s)	147, 248
AoxI	GGCC	1 cut(s)	291
ApoI	RAATTY	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	118, 143
AsuC2I	CCSGG	3 cut(s)	74, 148, 149
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	2 cut(s)	147, 248
AvaII	GGWCC	2 cut(s)	118, 143
AxyI	CCTNAGG	1 cut(s)	102
BaeI	ACNNNNGTAYC	2 cut(s)	263, 296
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	371
BccI	CCATC	4 cut(s)	38, 71, 129, 337
BcnI	CCSGG	3 cut(s)	74, 148, 149
BfaI	CTAG	1 cut(s)	240
Bme1390I	CCNGG	3 cut(s)	74, 148, 149
Bme18I	GGWCC	2 cut(s)	118, 143
BmeT110I	CYCGRG	2 cut(s)	147, 248
BmgT120I	GGNCC	2 cut(s)	118, 143
BmiI	GGNNCC	2 cut(s)	119, 145
BmrFI	CCNGG	3 cut(s)	74, 148, 149
BmsI	GCATC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BpmI	CTGGAG	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	3 cut(s)	74, 148, 149
BsaJI	CCNNGG	3 cut(s)	146, 147, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 193
Bse1I	ACTGG	3 cut(s)	83, 89, 227
Bse21I	CCTNAGG	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	146, 147, 148
BseGI	GGATG	4 cut(s)	49, 63, 121, 352
BseLI	CCNNNNNNNGG	2 cut(s)	73, 193
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	3 cut(s)	83, 89, 227
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	371
BsiHKCI	CYCGRG	2 cut(s)	147, 248
BsiSI	CCGG	2 cut(s)	73, 148
BslFI	GGGAC	3 cut(s)	89, 129, 131
BslI	CCNNNNNNNGG	2 cut(s)	73, 193
BsmFI	GGGAC	3 cut(s)	89, 129, 131
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	2 cut(s)	147, 248
Bsp1286I	GDGCHC	2 cut(s)	249, 371
Bsp143I	GATC	2 cut(s)	208, 351
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	119, 145
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	83, 89, 227
BssECI	CCNNGG	3 cut(s)	146, 147, 148
BssMI	GATC	2 cut(s)	208, 351
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	259, 291
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	4 cut(s)	49, 63, 121, 352
BstKTI	GATC	2 cut(s)	211, 354
BstMBI	GATC	2 cut(s)	208, 351
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	3 cut(s)	72, 146, 147
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	4 cut(s)	49, 63, 121, 352
Cac8I	GCNNGC	2 cut(s)	259, 291
Cfr13I	GGNCC	2 cut(s)	118, 143
Cfr9I	CCCGGG	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	3 cut(s)	129, 268, 277
CviJI	RGCY	9 cut(s)	92, 159, 167, 186, 200, 233, 247, 257, 293
CviKI_1	RGCY	9 cut(s)	92, 159, 167, 186, 200, 233, 247, 257, 293
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	210, 353
DpnII	GATC	2 cut(s)	208, 351
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	118, 143
Eco81I	CCTNAGG	1 cut(s)	102
Eco88I	CYCGRG	2 cut(s)	147, 248
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	3 cut(s)	132, 271, 280
FaiI	YATR	4 cut(s)	130, 237, 269, 278
FaqI	GGGAC	3 cut(s)	89, 129, 131
FatI	CATG	3 cut(s)	128, 267, 276
FokI	GGATG	4 cut(s)	50, 56, 108, 359
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	2 cut(s)	73, 148
Hin1II	CATG	3 cut(s)	132, 271, 280
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	2 cut(s)	73, 148
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	4 cut(s)	178, 218, 250, 284
HpyCH4III	ACNGT	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	132, 271, 280
Kzo9I	GATC	2 cut(s)	208, 351
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	16, 374
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	58, 131
MalI	GATC	2 cut(s)	210, 353
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	2 cut(s)	208, 351
MboII	GAAGA	2 cut(s)	122, 193
MfeI	CAATTG	2 cut(s)	227, 297
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	249, 371
MluCI	AATT	3 cut(s)	227, 297, 359
MnlI	CCTC	4 cut(s)	97, 170, 236, 246
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	266, 341
MspI	CCGG	2 cut(s)	73, 148
MspR9I	CCNGG	3 cut(s)	74, 148, 149
MunI	CAATTG	2 cut(s)	227, 297
NciI	CCSGG	3 cut(s)	74, 148, 149
NdeII	GATC	2 cut(s)	208, 351
NlaIII	CATG	3 cut(s)	132, 271, 280
NlaIV	GGNNCC	2 cut(s)	119, 145
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	119, 145
PspPI	GGNCC	2 cut(s)	118, 143
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	2 cut(s)	266, 341
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	208, 351
Sau96I	GGNCC	2 cut(s)	118, 143
ScrFI	CCNGG	3 cut(s)	74, 148, 149
SduI	GDGCHC	2 cut(s)	249, 371
SetI	ASST	3 cut(s)	94, 169, 312
SfaNI	GCATC	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	2 cut(s)	118, 143
SlaI	CTCGAG	1 cut(s)	248
SmaI	CCCGGG	1 cut(s)	149
SmiMI	CAYNNNNRTG	2 cut(s)	266, 341
SmlI	CTYRAG	2 cut(s)	248, 284
SmoI	CTYRAG	2 cut(s)	248, 284
Sse9I	AATT	3 cut(s)	227, 297, 359
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	3 cut(s)	72, 146, 147
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	2 cut(s)	162, 249
TasI	AATT	3 cut(s)	227, 297, 359
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	284
TspMI	CCCGGG	1 cut(s)	147
VpaK11BI	GGWCC	2 cut(s)	118, 143
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	248
XmaI	CCCGGG	1 cut(s)	147
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.