pycom12g21510

SKP1-interacting partner

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
22674359 .. 22674703
345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGCAATTCAATCGTTCATACGAAAATGCAACGCGAGATACGTCAGAATCTACACTCCCAATTCCTCAACCCCTACCGGCCTCCCTCCCTCCGCATCCTGCCTCCGCGTCTTCGACCCCGACCTCAACCAAAGGCTCAGATTTGCCCTCGATTTCCTCCCCTTTCGCTCCCCACACCCTGTCGCTTTCTCCCTCGGCCTCGTCTACCATTGGATTAGAGATAGCAACAGGCTGAATTGGGTTTTGATGTGCTATTCCAATACCCAAAAATCCGTTTATTTTCTCTTAACCCGAAATCGAATCTCCAAACGGGCTTTTCCAGTAACAAAACCCGTCAGGCAATAG

Protein Analysis

115

Amino Acids

13.34

Weight (kDa)

10.92

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 204
AccII CGCG 2 cut(s) 35, 108
AciI CCGC 2 cut(s) 93, 106
AgsI TTSAA 1 cut(s) 11
AoxI GGCC 2 cut(s) 79, 196
BbsI GAAGAC 1 cut(s) 103
BcgI CGANNNNNNTGC 1 cut(s) 28
BmsI GCATC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 320
Bsh1236I CGCG 2 cut(s) 35, 108
BshFI GGCC 2 cut(s) 81, 198
BsiSI CCGG 1 cut(s) 78
BsnI GGCC 2 cut(s) 81, 198
BspACI CCGC 2 cut(s) 93, 106
BspANI GGCC 2 cut(s) 81, 198
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 2 cut(s) 35, 108
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 95
BstFNI CGCG 2 cut(s) 35, 108
BstUI CGCG 2 cut(s) 35, 108
BstV2I GAAGAC 1 cut(s) 103
BsuRI GGCC 2 cut(s) 81, 198
BtsCI GGATG 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 77
CseI GACGC 1 cut(s) 97
CviJI RGCY 5 cut(s) 81, 136, 198, 232, 314
CviKI_1 RGCY 5 cut(s) 81, 136, 198, 232, 314
DdeI CTNAG 1 cut(s) 137
FaiI YATR 1 cut(s) 20
FblI GTMKAC 1 cut(s) 204
FokI GGATG 1 cut(s) 82
HaeIII GGCC 2 cut(s) 81, 198
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 97
HinfI GANTC 2 cut(s) 48, 300
HpaII CCGG 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 47, 140
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 42
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 6 cut(s) 91, 112, 192, 214, 322, 333
LweI GCATC 1 cut(s) 104
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 322
MboII GAAGA 1 cut(s) 103
MluCI AATT 3 cut(s) 6, 61, 235
MseI TTAA 1 cut(s) 287
MspI CCGG 1 cut(s) 78
MvnI CGCG 2 cut(s) 35, 108
NmeAIII GCCGAG 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 2 cut(s) 48, 300
SaqAI TTAA 1 cut(s) 287
SetI ASST 2 cut(s) 45, 126
SfaNI GCATC 1 cut(s) 104
Sse9I AATT 3 cut(s) 6, 61, 235
SsiI CCGC 2 cut(s) 93, 106
TaiI ACGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 114, 150, 298
TasI AATT 3 cut(s) 6, 61, 235
TfiI GAWTC 2 cut(s) 48, 300
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 7
TspGWI ACGGA 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.