Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

22705939 .. 22706805

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATCTTAATGCCGTTAGAACTGATCAAAATTGATACAATCATCAAAAGCCTCCTGCTTTCTCCAATGCCTGCTCAGGTTTGGTCACAAGCACTTTTCAGAGAAAGCATGCAGTCAGCCTTAGAAAATGTTGTAAGCACTATTTTCGATGGATCAAATGAAATTGCCGGGGGTCATTCTGAAGCTCAACTTGAACTACGCAGAATATTTGAAGCCAGCCCGTGTGGAAGTACTTGGGCACCACTTGGATGCAATGGGTTCATTTTTGTCATTAATAAATTATTTGAGCTCCTGAACTCGCTTCCTTTTGCTGTTAAGCAGGATCCATCTACAAGTAGTGCACGGTGTGCAAGGTTGCAAATTTGCACATCGTTTATTCGTATAGCCAAAACTGCCGACACAAGTGTTCCTCATGCCTCACATGAAGGTGACTCTATTTTCTTTGATACGTCCTTGATTTTCTGGTGCTTCTTGTGTATGCACAACTTTCATGCATTCAGTAGTACCAGTCATATGGAATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005049 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006810 GO:0006913 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009909 GO:0009910 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0010016 GO:0015931 GO:0022622 GO:0031074 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033157 GO:0042565 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046822 GO:0046825 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0051049 GO:0051093 GO:0051168 GO:0051169 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051641 GO:0051649 GO:0060341 GO:0061716 GO:0065001 GO:0065007 GO:0070201 GO:0071702 GO:0071705 GO:0090087 GO:0097064 GO:0097159 GO:0099402 GO:0140104 GO:0140142 GO:1901363 GO:1903827 GO:1905392 GO:1990428 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Xpo1

Protein Analysis

176

Amino Acids

19.43

Weight (kDa)

5.61

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exportin-5	PF19273	88 - 136	1.3e-10	Exportin-5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AclWI	GGATC	3 cut(s)	160, 317, 330
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	201
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	232, 505
AgsI	TTSAA	2 cut(s)	194, 212
AluBI	AGCT	2 cut(s)	185, 289
AluI	AGCT	2 cut(s)	185, 289
Alw21I	GWGCWC	2 cut(s)	291, 343
Alw44I	GTGCAC	1 cut(s)	339
AlwI	GGATC	3 cut(s)	160, 317, 330
ApaLI	GTGCAC	1 cut(s)	339
ApoI	RAATTY	1 cut(s)	360
AseI	ATTAAT	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	241, 343
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	291, 343
BccI	CCATC	2 cut(s)	143, 334
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	240, 324
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	507
BseSI	GKGCMC	2 cut(s)	241, 343
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	291, 343
BsiSI	CCGG	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	494
Bsp1286I	GDGCHC	3 cut(s)	241, 291, 343
Bsp143I	GATC	4 cut(s)	3, 24, 152, 322
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	240, 324
BspPI	GGATC	3 cut(s)	160, 317, 330
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	507
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	4 cut(s)	3, 24, 152, 322
Bst4CI	ACNGT	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	72, 110, 217
BstDEI	CTNAG	2 cut(s)	75, 121
BstF5I	GGATG	1 cut(s)	254
BstKTI	GATC	4 cut(s)	6, 27, 155, 325
BstMBI	GATC	4 cut(s)	3, 24, 152, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 392
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	167
BstSLI	GKGCMC	2 cut(s)	241, 343
BstX2I	RGATCY	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	72, 110, 217
Csp6I	GTAC	2 cut(s)	231, 504
CviAII	CATG	4 cut(s)	109, 413, 422, 491
CviJI	RGCY	7 cut(s)	51, 119, 185, 215, 219, 289, 386
CviKI_1	RGCY	7 cut(s)	51, 119, 185, 215, 219, 289, 386
CviQI	GTAC	2 cut(s)	231, 504
DdeI	CTNAG	2 cut(s)	75, 121
DpnI	GATC	4 cut(s)	5, 26, 154, 324
DpnII	GATC	4 cut(s)	3, 24, 152, 322
DraIII	CACNNNGTG	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	4 cut(s)	112, 416, 425, 494
FaiI	YATR	8 cut(s)	110, 383, 414, 423, 479, 492, 513, 515
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FatI	CATG	4 cut(s)	108, 412, 421, 490
FauNDI	CATATG	1 cut(s)	513
FbaI	TGATCA	1 cut(s)	24
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	291
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	4 cut(s)	112, 416, 425, 494
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	101, 181
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	8 cut(s)	112, 252, 341, 350, 358, 366, 481, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 392
HpyF3I	CTNAG	2 cut(s)	75, 121
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	4 cut(s)	112, 416, 425, 494
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	3, 24, 152, 322
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	9 cut(s)	62, 68, 84, 181, 229, 305, 305, 448, 520
LweI	GCATC	1 cut(s)	239
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	84, 428
MalI	GATC	4 cut(s)	5, 26, 154, 324
MboI	GATC	4 cut(s)	3, 24, 152, 322
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	3 cut(s)	241, 291, 343
MluCI	AATT	6 cut(s)	30, 162, 278, 360, 518, 523
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	3 cut(s)	62, 420, 427
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	5 cut(s)	8, 273, 315, 521, 526
MslI	CAYNNNNRTG	2 cut(s)	247, 426
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	347, 392
NciI	CCSGG	1 cut(s)	169
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	4 cut(s)	3, 24, 152, 322
NlaIII	CATG	4 cut(s)	112, 416, 425, 494
NlaIV	GGNNCC	2 cut(s)	240, 324
NmuCI	GTSAC	2 cut(s)	84, 428
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	112
PaeI	GCATGC	1 cut(s)	112
PctI	GAATGC	1 cut(s)	494
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PshBI	ATTAAT	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	240, 324
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	232, 505
RsaNI	GTAC	2 cut(s)	231, 504
RseI	CAYNNNNRTG	2 cut(s)	247, 426
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	5 cut(s)	8, 273, 315, 521, 526
Sau3AI	GATC	4 cut(s)	3, 24, 152, 322
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	3 cut(s)	241, 291, 343
SetI	ASST	6 cut(s)	81, 187, 291, 356, 430, 452
SfaNI	GCATC	1 cut(s)	239
SmiMI	CAYNNNNRTG	2 cut(s)	247, 426
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	6 cut(s)	30, 162, 278, 360, 518, 523
SspI	AATATT	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	147
TasI	AATT	6 cut(s)	30, 162, 278, 360, 518, 523
TatI	WGTACW	1 cut(s)	230
Tru1I	TTAA	5 cut(s)	8, 273, 315, 521, 526
Tru9I	TTAA	5 cut(s)	8, 273, 315, 521, 526
TseFI	GTSAC	2 cut(s)	84, 428
Tsp45I	GTSAC	2 cut(s)	84, 428
TspDTI	ATGAA	4 cut(s)	174, 250, 438, 479
VneI	GTGCAC	1 cut(s)	339
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	1 cut(s)	112
ZrmI	AGTACT	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.