Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23402901 .. 23404194

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22560.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTCCATCGTCCTCCCTGATCACGACCGCTTAAATATTATTCAAACAATTAATCTCTCTTTCTATCCTTTTCACCATTATTTTTATTTATTTTTATATATTTTAAAACAGGGTCCTATGCGTTCAAAATATTTTTTTTTAACCCCAAAACAAACATCACTCGCTGAAATATCCAGTCCAATACGTGTTCAAAGTATAGAGCTAGAAGAAGAAACTCTGCAAATTGTTATTTCTTCCCTGAGTAAGATGGACTCTTCGTTCTTCCAAAACCCTAATTCTGAATTCTCGTTCGAATCTTCTTCTTCCTTCAACTCTCAAGAATATTTTCACGATGATCATCTCTCATGGAACATGTTCAACTCTAATCGATCATCACAACCAATCAAAATGCTTCTATATGGAGTTCTTGCTGAGGCGCCTTCAGGAGATGGGAACTCATCGGGTTCAAGAGTATCATCCACTCACTCCAAAGACCATGAAGAAGTGAATTCTTCTAGTGCCACTGCTGACGAAGATCAAGTGGTTGCTTATAGAGGTGTTCGGCGGCGGCCGTGGGGAAAGTTTGCGGCAGAGATAAGAGATTCGACGCGAAACGGTGTTAGGGTTTGGTTGGGAACTTTTGACACGGCGGAGGCTGCTGCTTTGGCTTATGACCAAGCAGCATTTGCAATGCGGGGGTCTTTGGCGGTCCTCAACTTTCCGGTGGACGTGGTTCATCAGTCGCTTGTGGAGATGGAGTATGACTTTGAAGAGGGTTCGTCTCCGGTGTTGGCCTTGAAGAGGAGGCACTCCATGAAGAGAAGGTCATCGATGAACGAAAATAATAAATTACTGTACCGTAATCAGCATCAAAAGAACGATGAAGAAGATGATGATCAGTTGGAAAATGTTGTGGTGTTTGAGGATTTAGGCCTGCACTCCCATACCACGTTACTTGTGTTTTCGGTATCCAACTTTCCGAAGCTATACGTGGATGTTAACCACACCATTTGGACCTTGTCTTTTTGTTTTCTAATTTTGGGAAAGTATGTGGAGAAGAATCAGAAGATGACGGTCACTATAGTTAATTACTCCTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

361

Amino Acids

41.27

Weight (kDa)

5.63

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	415
AccII	CGCG	1 cut(s)	589
AciI	CCGC	7 cut(s)	28, 544, 547, 566, 629, 673, 686
AcoI	YGGCCR	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	281, 487
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	416
AfaI	GTAC	1 cut(s)	836
AfiI	CCNNNNNNNGG	1 cut(s)	780
AflIII	ACRYGT	2 cut(s)	184, 351
AgsI	TTSAA	8 cut(s)	44, 126, 191, 310, 358, 447, 749, 778
AjiI	CACGTC	1 cut(s)	709
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	202, 964
AluI	AGCT	2 cut(s)	202, 964
Alw26I	GTCTC	1 cut(s)	765
AoxI	GGCC	3 cut(s)	548, 771, 910
ApeKI	GCWGC	3 cut(s)	635, 638, 659
ApoI	RAATTY	2 cut(s)	281, 487
AseI	ATTAAT	1 cut(s)	51
Asp700I	GAANNNNTTC	2 cut(s)	324, 353
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	3 cut(s)	113, 688, 993
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	291
AvaII	GGWCC	3 cut(s)	113, 688, 993
BanI	GGYRCC	1 cut(s)	415
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	622, 625, 671
BccI	CCATC	4 cut(s)	14, 241, 422, 727
BceAI	ACGGC	2 cut(s)	535, 642
BciVI	GTATCC	1 cut(s)	958
BclI	TGATCA	3 cut(s)	19, 334, 874
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	2 cut(s)	203, 495
BfmI	CTRYAG	1 cut(s)	1059
BfoI	RGCGCY	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	958
BisI	GCNGC	6 cut(s)	545, 548, 567, 636, 639, 660
BlsI	GCNGC	6 cut(s)	546, 549, 568, 637, 640, 661
Bme18I	GGWCC	3 cut(s)	113, 688, 993
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	3 cut(s)	113, 688, 993
BmiI	GGNNCC	2 cut(s)	114, 417
BmsI	GCATC	1 cut(s)	856
Bpu10I	CCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	300
Bsa29I	ATCGAT	2 cut(s)	367, 809
BsaAI	YACGTR	2 cut(s)	185, 970
BsaBI	GATNNNNATC	2 cut(s)	336, 873
BsaHI	GRCGYC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	551
BsaWI	WCCGGW	2 cut(s)	700, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	2 cut(s)	336, 873
BseCI	ATCGAT	2 cut(s)	367, 809
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	2 cut(s)	455, 979
BseJI	GATNNNNATC	2 cut(s)	336, 873
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	230, 402
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	796
BseX3I	CGGCCG	1 cut(s)	548
BseXI	GCAGC	3 cut(s)	622, 625, 671
BsgI	GTGCAG	1 cut(s)	899
Bsh1236I	CGCG	1 cut(s)	589
Bsh1285I	CGRYCG	2 cut(s)	28, 551
BshFI	GGCC	3 cut(s)	550, 773, 912
BshNI	GGYRCC	1 cut(s)	415
BshVI	ATCGAT	2 cut(s)	367, 809
BsiEI	CGRYCG	2 cut(s)	28, 551
BsiSI	CCGG	2 cut(s)	701, 764
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	1 cut(s)	765
BsmBI	CGTCTC	1 cut(s)	765
BsnI	GGCC	3 cut(s)	550, 773, 912
Bsp119I	TTCGAA	1 cut(s)	291
Bsp143I	GATC	5 cut(s)	19, 334, 368, 514, 874
BspACI	CCGC	7 cut(s)	28, 544, 547, 566, 629, 673, 686
BspANI	GGCC	3 cut(s)	550, 773, 912
BspCNI	CTCAG	2 cut(s)	231, 403
BspDI	ATCGAT	2 cut(s)	367, 809
BspFNI	CGCG	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	114, 417
BspT104I	TTCGAA	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	5 cut(s)	19, 334, 368, 514, 874
BssNI	GRCGYC	1 cut(s)	416
Bst4CI	ACNGT	4 cut(s)	596, 834, 839, 1054
Bst6I	CTCTTC	4 cut(s)	259, 744, 773, 791
BstACI	GRCGYC	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstBAI	YACGTR	2 cut(s)	185, 970
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	914
BstDEI	CTNAG	2 cut(s)	239, 411
BstDSI	CCRYGG	1 cut(s)	551
BstENI	CCTNNNNNAGG	1 cut(s)	778
BstF5I	GGATG	2 cut(s)	455, 979
BstFNI	CGCG	1 cut(s)	589
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	5 cut(s)	22, 337, 371, 517, 877
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	5 cut(s)	19, 334, 368, 514, 874
BstMCI	CGRYCG	2 cut(s)	28, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 644, 665
BstNSI	RCATGY	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	1059
BstUI	CGCG	1 cut(s)	589
BstV1I	GCAGC	3 cut(s)	622, 625, 671
BstZI	CGGCCG	1 cut(s)	548
Bsu15I	ATCGAT	2 cut(s)	367, 809
BsuI	GTATCC	1 cut(s)	958
BsuRI	GGCC	3 cut(s)	550, 773, 912
BsuTUI	ATCGAT	2 cut(s)	367, 809
BtgI	CCRYGG	1 cut(s)	551
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	2 cut(s)	455, 979
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	914
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	113, 688, 993
ClaI	ATCGAT	2 cut(s)	367, 809
CseI	GACGC	1 cut(s)	595
Csp6I	GTAC	1 cut(s)	835
CspCI	CAANNNNNGTGG	4 cut(s)	916, 951, 971, 1006
CviAII	CATG	4 cut(s)	345, 352, 476, 793
CviJI	RGCY	7 cut(s)	202, 550, 635, 647, 773, 912, 964
CviKI_1	RGCY	7 cut(s)	202, 550, 635, 647, 773, 912, 964
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	2 cut(s)	239, 411
DinI	GGCGCC	1 cut(s)	417
DpnI	GATC	5 cut(s)	21, 336, 370, 516, 876
DpnII	GATC	5 cut(s)	19, 334, 368, 514, 874
DraI	TTTAAA	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	548
EagI	CGGCCG	1 cut(s)	548
Eam1104I	CTCTTC	4 cut(s)	259, 744, 773, 791
EarI	CTCTTC	4 cut(s)	259, 744, 773, 791
EciI	GGCGGA	1 cut(s)	644
EclXI	CGGCCG	1 cut(s)	548
Eco147I	AGGCCT	1 cut(s)	912
Eco47I	GGWCC	3 cut(s)	113, 688, 993
Eco52I	CGGCCG	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	778
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRI	GAATTC	2 cut(s)	281, 487
EgeI	GGCGCC	1 cut(s)	417
EheI	GGCGCC	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	765
FaeI	CATG	4 cut(s)	348, 355, 479, 796
FatI	CATG	4 cut(s)	344, 351, 475, 792
FauI	CCCGC	1 cut(s)	666
FbaI	TGATCA	3 cut(s)	19, 334, 874
Fnu4HI	GCNGC	6 cut(s)	545, 548, 567, 636, 639, 660
FokI	GGATG	2 cut(s)	442, 986
Fsp4HI	GCNGC	6 cut(s)	545, 548, 567, 636, 639, 660
FspBI	CTAG	2 cut(s)	203, 495
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	6 cut(s)	545, 548, 567, 636, 639, 660
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	3 cut(s)	550, 773, 912
HapII	CCGG	2 cut(s)	701, 764
HgaI	GACGC	1 cut(s)	595
HhaI	GCGC	1 cut(s)	418
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	4 cut(s)	348, 355, 479, 796
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HinfI	GANTC	4 cut(s)	251, 293, 581, 1039
HpaI	GTTAAC	1 cut(s)	979
HpaII	CCGG	2 cut(s)	701, 764
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	706, 979
Hpy188I	TCNGA	3 cut(s)	280, 960, 1044
Hpy188III	TCNNGA	5 cut(s)	23, 317, 329, 423, 447
Hpy8I	GTNNAC	2 cut(s)	706, 979
Hpy99I	CGWCG	1 cut(s)	589
HpyAV	CCTTC	3 cut(s)	316, 429, 795
HpyCH4III	ACNGT	4 cut(s)	596, 834, 839, 1054
HpyCH4IV	ACGT	4 cut(s)	184, 708, 929, 969
HpyCH4V	TGCA	3 cut(s)	220, 668, 916
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 644, 665
HpyF3I	CTNAG	2 cut(s)	239, 411
HpySE526I	ACGT	4 cut(s)	184, 708, 929, 969
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	4 cut(s)	348, 355, 479, 796
HspAI	GCGC	1 cut(s)	416
KasI	GGCGCC	1 cut(s)	415
Ksp22I	TGATCA	3 cut(s)	19, 334, 874
KspAI	GTTAAC	1 cut(s)	979
Kzo9I	GATC	5 cut(s)	19, 334, 368, 514, 874
LpnPI	CCDG	8 cut(s)	30, 95, 187, 251, 408, 714, 777, 926
Lsp1109I	GCAGC	3 cut(s)	622, 625, 671
LweI	GCATC	1 cut(s)	856
MaeI	CTAG	2 cut(s)	203, 495
MaeII	ACGT	4 cut(s)	184, 708, 929, 969
MaeIII	GTNAC	2 cut(s)	930, 1054
MalI	GATC	5 cut(s)	21, 336, 370, 516, 876
MboI	GATC	5 cut(s)	19, 334, 368, 514, 874
MluCI	AATT	8 cut(s)	48, 222, 274, 281, 487, 827, 1014, 1066
Mly113I	GGCGCC	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	861, 975
MnlI	CCTC	9 cut(s)	23, 406, 527, 625, 701, 745, 774, 777, 895
MroXI	GAANNNNTTC	2 cut(s)	324, 353
MseI	TTAA	7 cut(s)	32, 51, 104, 140, 978, 1065, 1081
MspI	CCGG	2 cut(s)	701, 764
MvnI	CGCG	1 cut(s)	589
MwoI	GCNNNNNNNGC	3 cut(s)	635, 644, 665
NarI	GGCGCC	1 cut(s)	416
NdeII	GATC	5 cut(s)	19, 334, 368, 514, 874
NlaIII	CATG	4 cut(s)	348, 355, 479, 796
NlaIV	GGNNCC	2 cut(s)	114, 417
NmuCI	GTSAC	1 cut(s)	1054
NspI	RCATGY	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	291
PceI	AGGCCT	1 cut(s)	912
PciI	ACATGT	1 cut(s)	351
PdmI	GAANNNNTTC	2 cut(s)	324, 353
PfeI	GAWTC	3 cut(s)	293, 581, 1039
PflFI	GACNNNGTC	1 cut(s)	997
PkrI	GCNGC	6 cut(s)	546, 549, 568, 637, 640, 661
PleI	GAGTC	1 cut(s)	245
PluTI	GGCGCC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	245
Ppu21I	YACGTR	2 cut(s)	185, 970
PpuMI	RGGWCCY	1 cut(s)	113
PscI	ACATGT	1 cut(s)	351
PshBI	ATTAAT	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	114, 417
PspPI	GGNCC	3 cut(s)	113, 688, 993
PspPPI	RGGWCCY	1 cut(s)	113
PsyI	GACNNNGTC	1 cut(s)	997
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
SaqAI	TTAA	7 cut(s)	32, 51, 104, 140, 978, 1065, 1081
SatI	GCNGC	6 cut(s)	545, 548, 567, 636, 639, 660
Sau3AI	GATC	5 cut(s)	19, 334, 368, 514, 874
Sau96I	GGNCC	3 cut(s)	113, 688, 993
SchI	GAGTC	1 cut(s)	245
SetI	ASST	9 cut(s)	187, 204, 538, 711, 806, 932, 966, 972, 998
SfaNI	GCATC	1 cut(s)	856
SfcI	CTRYAG	1 cut(s)	1059
SfoI	GGCGCC	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	291
SinI	GGWCC	3 cut(s)	113, 688, 993
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	8 cut(s)	48, 222, 274, 281, 487, 827, 1014, 1066
SseBI	AGGCCT	1 cut(s)	912
SsiI	CCGC	7 cut(s)	28, 544, 547, 566, 629, 673, 686
SspDI	GGCGCC	1 cut(s)	415
SspI	AATATT	3 cut(s)	37, 131, 323
SspMI	CTAG	2 cut(s)	203, 495
StuI	AGGCCT	1 cut(s)	912
TaaI	ACNGT	4 cut(s)	596, 834, 839, 1054
TaiI	ACGT	4 cut(s)	187, 711, 932, 972
TaqI	TCGA	4 cut(s)	291, 367, 584, 809
TasI	AATT	8 cut(s)	48, 222, 274, 281, 487, 827, 1014, 1066
TauI	GCSGC	3 cut(s)	547, 550, 569
TfiI	GAWTC	3 cut(s)	293, 581, 1039
Tru1I	TTAA	7 cut(s)	32, 51, 104, 140, 978, 1065, 1081
Tru9I	TTAA	7 cut(s)	32, 51, 104, 140, 978, 1065, 1081
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	3 cut(s)	635, 638, 659
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	5 cut(s)	492, 704, 809, 827, 876
TspRI	CASTG	1 cut(s)	508
Tth111I	GACNNNGTC	1 cut(s)	997
VpaK11BI	GGWCC	3 cut(s)	113, 688, 993
VspI	ATTAAT	1 cut(s)	51
XagI	CCTNNNNNAGG	1 cut(s)	778
XapI	RAATTY	2 cut(s)	281, 487
XceI	RCATGY	1 cut(s)	355
XmnI	GAANNNNTTC	2 cut(s)	324, 353
XspI	CTAG	2 cut(s)	203, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.