Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23482023 .. 23482847

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGCAGAAGTATTGGCCGCTACTGGCCTGCTTATACAGCATCTGTAATTGTGGCGCCTGTAACTATGCTGGGACATACAATGAGAAAAAATCATGTTCCTCGGTCGTGGCTAAACCCAACAGGCAATTTGTTGGTTGTGTTAGAAGAGTGGGGAGGAGATCCGAATGGGATATTTTTGGTGAGAAGGGAAGTAGATAGCATATGTGCTGATATTTATGAGTGGCCTAAAGCCATTTGTCATGTGGCCTGGACAGAAATATCATCAATAAAGTTTGCTAGTTTTGGAACGCCGGAAGGCGCTTGTGGAAGCTTCCGTGAGGGAGCCTGTCATGCCCAACTCAGTTGTATCGGACAGAACTCATGCTCGGTAACTGTAGAACCTGAGAATTTGGAGGCGATCCATGTCCAAGTGTATGAAGAAACTCTCCGTGGAGGCCATTTGCAGCTAATGATTCTCAATCTCTCGAGTAAACTGATGAAGGTCCGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

176

Amino Acids

19.41

Weight (kDa)

6.99

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	1 - 54	1.7e-14	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	2 cut(s)	188, 427
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	345, 481
AluI	AGCT	2 cut(s)	345, 481
AlwI	GGATC	2 cut(s)	188, 427
AlwNI	CAGNNNCTG	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	5 cut(s)	49, 59, 257, 279, 469
ApeKI	GCWGC	2 cut(s)	6, 478
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	2 cut(s)	91, 335
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	18, 490
BciT130I	CCWGG	1 cut(s)	283
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	2 cut(s)	92, 336
BisI	GCNGC	3 cut(s)	7, 52, 479
BlsI	GCNGC	3 cut(s)	8, 53, 480
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	517
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	90, 358
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	134, 463
Bse1I	ACTGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	134, 463
BseMII	CTCAG	2 cut(s)	388, 408
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	18, 490
BseYI	CCCAGC	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	5 cut(s)	51, 61, 259, 281, 471
BshNI	GGYRCC	1 cut(s)	88
BsiEI	CGRYCG	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	5 cut(s)	51, 61, 259, 281, 471
BsoBI	CYCGRG	1 cut(s)	499
Bsp143I	GATC	2 cut(s)	193, 432
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	5 cut(s)	51, 61, 259, 281, 471
BspCNI	CTCAG	2 cut(s)	387, 409
BspLI	GGNNCC	2 cut(s)	90, 358
BspPI	GGATC	2 cut(s)	188, 427
BspT107I	GGYRCC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	134, 463
BssMI	GATC	2 cut(s)	193, 432
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	374, 417
BstDSI	CCRYGG	1 cut(s)	463
BstH2I	RGCGCY	2 cut(s)	92, 336
BstHHI	GCGC	2 cut(s)	91, 335
BstKTI	GATC	2 cut(s)	196, 435
BstMBI	GATC	2 cut(s)	193, 432
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 71, 365
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	18, 490
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	5 cut(s)	51, 61, 259, 281, 471
BtgI	CCRYGG	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	2 cut(s)	91, 335
Cfr13I	GGNCC	1 cut(s)	517
CviAII	CATG	6 cut(s)	10, 128, 275, 365, 396, 437
DdeI	CTNAG	2 cut(s)	374, 417
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	2 cut(s)	195, 434
DpnII	GATC	2 cut(s)	193, 432
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	517
Eco88I	CYCGRG	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	281
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
FaeI	CATG	6 cut(s)	13, 131, 278, 368, 399, 440
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	6 cut(s)	9, 127, 274, 364, 395, 436
FauNDI	CATATG	1 cut(s)	236
Fnu4HI	GCNGC	3 cut(s)	7, 52, 479
Fsp4HI	GCNGC	3 cut(s)	7, 52, 479
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	2 cut(s)	90, 334
GluI	GCNGC	3 cut(s)	7, 52, 479
GsaI	CCCAGC	1 cut(s)	107
HaeII	RGCGCY	2 cut(s)	92, 336
HaeIII	GGCC	5 cut(s)	51, 61, 259, 281, 471
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	2 cut(s)	91, 335
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	6 cut(s)	13, 131, 278, 368, 399, 440
Hin6I	GCGC	2 cut(s)	89, 333
HinP1I	GCGC	2 cut(s)	89, 333
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	1 cut(s)	487
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	3 cut(s)	198, 386, 521
Hpy188III	TCNNGA	1 cut(s)	499
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	3 cut(s)	213, 323, 508
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 71, 365
HpyF3I	CTNAG	2 cut(s)	374, 417
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	6 cut(s)	13, 131, 278, 368, 399, 440
HspAI	GCGC	2 cut(s)	89, 333
KasI	GGCGCC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	193, 432
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	2 cut(s)	18, 490
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	94, 403
MalI	GATC	2 cut(s)	195, 434
MboI	GATC	2 cut(s)	193, 432
MboII	GAAGA	2 cut(s)	191, 464
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	3 cut(s)	81, 160, 421
Mly113I	GGCGCC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	144, 182, 346, 421, 461
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	3 cut(s)	12, 71, 365
NarI	GGCGCC	1 cut(s)	89
NdeI	CATATG	1 cut(s)	236
NdeII	GATC	2 cut(s)	193, 432
NlaIII	CATG	6 cut(s)	13, 131, 278, 368, 399, 440
NlaIV	GGNNCC	2 cut(s)	90, 358
PaeR7I	CTCGAG	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	3 cut(s)	8, 53, 480
PluTI	GGCGCC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	90, 358
PspPI	GGNCC	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	193
SatI	GCNGC	3 cut(s)	7, 52, 479
Sau3AI	GATC	2 cut(s)	193, 432
Sau96I	GGNCC	1 cut(s)	517
ScrFI	CCNGG	1 cut(s)	283
SetI	ASST	5 cut(s)	22, 347, 418, 483, 519
SfaNI	GCATC	1 cut(s)	83
SfcI	CTRYAG	1 cut(s)	408
SfoI	GGCGCC	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	517
SlaI	CTCGAG	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	3 cut(s)	81, 160, 421
SsiI	CCGC	1 cut(s)	52
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	500
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	81, 160, 421
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	487
TseI	GCWGC	2 cut(s)	6, 478
TspDTI	ATGAA	2 cut(s)	465, 527
TspGWI	ACGGA	2 cut(s)	338, 452
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	1 cut(s)	421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	499
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.