pycom12g22900

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
23665329 .. 23666308
980 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 597 bp
ATGAAGAAAAAGAAGAAAGGGTTGACTGATTCTAAGCATGAGAGTGAGTACAAAAAAGGTTTGAGACCTGTCTTGTGGTTGACGCCAGATTTCCCGTTGAAAACAGATGAGCTTCTTCCTTTACTAGACATCTTAGCAAACAAGGTCAAGGCTATAAGGAGACTCAGGGAGCTTTTGACAACTAAATTGCCCCCTGGCACTTTTCCTGTCAAGGTTGCTATTCCGATTGTCCCAACAATACGAGTTTTTGTAACATTTACCAAATTTGAGGAGCTTCAGCCAGTGGAGGAGTTCTCAACCCCTCTCTCCAGTCCTGCACATTTTCAGGATTCAAAGTCAAAGGACTCAGAAGGATCCTCGTCATGGATGTCGTGGGTGAGAGGAAGTCGTGGTGGGCAATCAAGTGACAGTGATAGCCACCGGTATAAGGATGAGATTGACCCTTTCCTCGTACCATCGGACTATACCTGGGTTGATGCCAATGAGAAAAAACGCCGCATGAAAGCCAAGAAGGCCAAGAGCAAGAAACACAGGAAACATGCAACAGCCAAGCCCGGTGATGCAGGACATCAGGCAAGCGAGAATGTTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_5 GPCR_chapero_1

Protein Analysis

199

Amino Acids

22.48

Weight (kDa)

9.7

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANKRD13_C PF11904 8 - 156 2.8e-52 ANKRD13 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 496
AclWI GGATC 2 cut(s) 348, 361
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 50, 453
AfiI CCNNNNNNNGG 2 cut(s) 363, 427
AgeI ACCGGT 1 cut(s) 420
AgsI TTSAA 3 cut(s) 100, 333, 590
AjnI CCWGG 2 cut(s) 193, 467
AluBI AGCT 3 cut(s) 112, 172, 274
AluI AGCT 3 cut(s) 112, 172, 274
Alw26I GTCTC 2 cut(s) 58, 154
AlwI GGATC 2 cut(s) 348, 361
AoxI GGCC 1 cut(s) 513
ApoI RAATTY 1 cut(s) 263
AsiGI ACCGGT 1 cut(s) 420
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 2 cut(s) 388, 569
BamHI GGATCC 1 cut(s) 353
BccI CCATC 1 cut(s) 463
BciT130I CCWGG 2 cut(s) 195, 469
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 2 cut(s) 58, 154
BfaI CTAG 1 cut(s) 125
BglI GCCNNNNNGGC 1 cut(s) 512
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
Bme1390I CCNGG 3 cut(s) 195, 469, 555
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 3 cut(s) 195, 469, 555
BmsI GCATC 2 cut(s) 466, 550
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpmI CTGGAG 1 cut(s) 292
BpuMI CCSGG 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 193, 468
BsaWI WCCGGW 1 cut(s) 420
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 427
Bse118I RCCGGY 1 cut(s) 420
Bse1I ACTGG 2 cut(s) 281, 309
BseBI CCWGG 2 cut(s) 195, 469
BseDI CCNNGG 2 cut(s) 193, 468
BseGI GGATG 2 cut(s) 372, 436
BseLI CCNNNNNNNGG 2 cut(s) 363, 427
BseMII CTCAG 2 cut(s) 178, 360
BseNI ACTGG 2 cut(s) 281, 309
BseRI GAGGAG 2 cut(s) 284, 302
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 1 cut(s) 515
BshTI ACCGGT 1 cut(s) 420
BsiSI CCGG 2 cut(s) 421, 555
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 363, 427
BsmAI GTCTC 2 cut(s) 58, 154
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 515
Bso31I GGTCTC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 353
BspACI CCGC 1 cut(s) 496
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 177, 359
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 2 cut(s) 348, 361
BspTNI GGTCTC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 420
BsrI ACTGG 2 cut(s) 281, 309
BssAI RCCGGY 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 193, 468
BssMI GATC 1 cut(s) 353
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 195, 469
Bst4CI ACNGT 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 577
BstDEI CTNAG 4 cut(s) 33, 133, 164, 346
BstF5I GGATG 2 cut(s) 372, 436
BstKTI GATC 1 cut(s) 356
BstMAI GTCTC 2 cut(s) 58, 154
BstMBI GATC 1 cut(s) 353
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNI CCWGG 2 cut(s) 195, 469
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 3 cut(s) 193, 467, 553
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 1 cut(s) 515
BtsCI GGATG 2 cut(s) 372, 436
BtsIMutI CAGTG 2 cut(s) 288, 415
Cac8I GCNNGC 1 cut(s) 577
Cfr10I RCCGGY 1 cut(s) 420
CseI GACGC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 49, 452
CspAI ACCGGT 1 cut(s) 420
CviAII CATG 4 cut(s) 38, 363, 499, 539
CviQI GTAC 2 cut(s) 49, 452
DdeI CTNAG 4 cut(s) 33, 133, 164, 346
DpnI GATC 1 cut(s) 355
DpnII GATC 1 cut(s) 353
Eco31I GGTCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 193, 467
FaeI CATG 4 cut(s) 41, 366, 502, 542
FaiI YATR 7 cut(s) 39, 155, 364, 426, 465, 500, 540
FaqI GGGAC 1 cut(s) 215
FatI CATG 4 cut(s) 37, 362, 498, 538
Fnu4HI GCNGC 1 cut(s) 496
FokI GGATG 2 cut(s) 379, 443
Fsp4HI GCNGC 1 cut(s) 496
FspBI CTAG 1 cut(s) 125
GluI GCNGC 1 cut(s) 496
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 1 cut(s) 515
HapII CCGG 2 cut(s) 421, 555
HgaI GACGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 4 cut(s) 41, 366, 502, 542
HincII GTYRAC 2 cut(s) 24, 81
HindII GTYRAC 2 cut(s) 24, 81
HinfI GANTC 4 cut(s) 29, 162, 329, 344
HpaII CCGG 2 cut(s) 421, 555
HphI GGTGA 2 cut(s) 388, 569
Hpy166II GTNNAC 2 cut(s) 24, 81
Hpy188I TCNGA 3 cut(s) 225, 349, 460
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 2 cut(s) 24, 81
HpyAV CCTTC 2 cut(s) 344, 505
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 3 cut(s) 317, 542, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 4 cut(s) 33, 133, 164, 346
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 4 cut(s) 41, 366, 502, 542
Kzo9I GATC 1 cut(s) 353
LmnI GCTCC 2 cut(s) 169, 271
LweI GCATC 2 cut(s) 466, 550
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 250, 404
MalI GATC 1 cut(s) 355
MboI GATC 1 cut(s) 353
MboII GAAGA 3 cut(s) 16, 25, 107
MflI RGATCY 1 cut(s) 353
MluCI AATT 2 cut(s) 185, 263
MlyI GAGTC 2 cut(s) 156, 338
MnlI CCTC 6 cut(s) 262, 280, 312, 367, 374, 458
MslI CAYNNNNRTG 1 cut(s) 42
MspI CCGG 2 cut(s) 421, 555
MspR9I CCNGG 3 cut(s) 195, 469, 555
MvaI CCWGG 2 cut(s) 195, 469
MwoI GCNNNNNNNGC 1 cut(s) 512
NciI CCSGG 1 cut(s) 555
NdeII GATC 1 cut(s) 353
NlaIII CATG 4 cut(s) 41, 366, 502, 542
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 404
NspI RCATGY 1 cut(s) 542
PfeI GAWTC 2 cut(s) 29, 329
PinAI ACCGGT 1 cut(s) 420
PkrI GCNGC 1 cut(s) 497
PleI GAGTC 2 cut(s) 156, 338
PpsI GAGTC 2 cut(s) 156, 338
Psp6I CCWGG 2 cut(s) 193, 467
PspGI CCWGG 2 cut(s) 193, 467
PspN4I GGNNCC 1 cut(s) 355
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 2 cut(s) 50, 453
RsaNI GTAC 2 cut(s) 49, 452
RseI CAYNNNNRTG 1 cut(s) 42
SatI GCNGC 1 cut(s) 496
Sau3AI GATC 1 cut(s) 353
SchI GAGTC 2 cut(s) 156, 338
ScrFI CCNGG 3 cut(s) 195, 469, 555
SetI ASST 8 cut(s) 61, 70, 114, 147, 174, 216, 276, 470
SfaNI GCATC 2 cut(s) 466, 550
SmiMI CAYNNNNRTG 1 cut(s) 42
Sse9I AATT 2 cut(s) 185, 263
SsiI CCGC 1 cut(s) 496
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 3 cut(s) 193, 467, 553
TaaI ACNGT 1 cut(s) 410
TasI AATT 2 cut(s) 185, 263
TatI WGTACW 1 cut(s) 48
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 2 cut(s) 29, 329
TscAI CASTG 2 cut(s) 288, 415
TseFI GTSAC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 2 cut(s) 17, 515
TspRI CASTG 2 cut(s) 288, 415
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 542
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.