Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23719910 .. 23720984

Gene Structure 1075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCTGCTTTTGAACTTAATGTGCAATAAGCTCACATGTTCAGTTCCTGCCAACCTCGGCAAGTTAACCAAGTTAGAGGTACTTGAGCTGTGGCAGAACTCTTTTACAGTTCATCTTCCAACAAATCTCGGAAAGAATTCCCCATTGCAATGGTTAGATGTGTCATCGAATTCATTGTTGGGTGATATCCCACCAGGTTTGTGTTCATTGGTTCGCGTTCGTATGCAAAACAATCTTATTTCGGGATCCATCCCAGTTGGTCTAGGAAATCTTCCAGTTCTTCAAAGGCTAGAATTGGCGGGAAACAATCTTACTGGCCAAATTCCCTTGGACATTACTCTGTCTGCATCGCTCTCCTTCATCGATGTCTATGACAACCGCCTTGAATCATCTCTTCCTTCGAGTATCATTTCCCTTATGAATCTTCAAACCTTCATGGCTTCCAACAACAACTTGGAAAGCAAGCTACCAGACCAGTTCCAAGACTGCCCGTCTCTCTCAGTCCTCGACATTTCAAACAACCATATCTCCGGAAAAAATCCAGAGAGCATAGCTTCTTGTGAAAAGCTGGTGAATCTGAACCTCAGAAACAACCAGTTTAACGGGGAAATCCCCCGACCAATAGCAGCAATGCCAACATTGTCAGTTCTCGATCTGTCCAACAATTCTTTAATAGGTCAAATCCCGGAAAGTTTCGGAAGCTCACCAGCCTTGGAAATGCTTAACTTGTCCTACAATAGGCTTGAAGGCCCAGTACCTGCAAATGGTATCCCAATGACCATAAACCCGAATGATCTCATAGGCAATGCCGGTCTTTGCGGAGGCATACTTCCACCGTGCTCTCACAGTTTAGCAGCGACAGCAGCTCCTCACCGGAATATGCACATCAAACACATCGTTACTGGATTCGTCGTCGGAAACAGTAATTTCGACTGTTGGAATAGCATTTTTCGCAGGGAGATGGATGTATCGGAAATGGTACTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

330

Amino Acids

35.58

Weight (kDa)

5.33

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	4 - 100	7.4e-06	Leucine-rich repeat region
LRR_8	PF13855	141 - 200	5.7e-10	Leucine rich repeat
LRR_8	PF13855	210 - 248	1.6e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	766
AccII	CGCG	1 cut(s)	216
AccIII	TCCGGA	1 cut(s)	530
AciI	CCGC	3 cut(s)	299, 379, 819
AclWI	GGATC	2 cut(s)	240, 253
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	3 cut(s)	136, 169, 321
AfaI	GTAC	3 cut(s)	81, 756, 981
AfiI	CCNNNNNNNGG	2 cut(s)	738, 764
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	6 cut(s)	13, 284, 386, 428, 516, 746
AhdI	GACNNNNNGTC	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	7 cut(s)	31, 88, 466, 554, 568, 702, 866
AluI	AGCT	7 cut(s)	31, 88, 466, 554, 568, 702, 866
Alw21I	GWGCWC	1 cut(s)	842
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	2 cut(s)	240, 253
AlwNI	CAGNNNCTG	2 cut(s)	47, 758
Aor13HI	TCCGGA	1 cut(s)	530
AoxI	GGCC	2 cut(s)	316, 748
ApeKI	GCWGC	4 cut(s)	4, 626, 854, 863
ApoI	RAATTY	3 cut(s)	136, 169, 321
Asp700I	GAANNNNTTC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	749
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	4 cut(s)	194, 583, 696, 863
BalI	TGGCCA	1 cut(s)	318
BamHI	GGATCC	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	3 cut(s)	638, 866, 875
BccI	CCATC	2 cut(s)	257, 955
BciT130I	CCWGG	1 cut(s)	195
BciVI	GTATCC	1 cut(s)	779
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	263, 290
BfuAI	ACCTGC	1 cut(s)	766
BfuI	GTATCC	1 cut(s)	779
BisI	GCNGC	4 cut(s)	5, 627, 855, 864
BlsI	GCNGC	4 cut(s)	6, 628, 856, 865
Bme1390I	CCNGG	2 cut(s)	195, 686
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	749
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	195, 686
BmrI	ACTGGG	2 cut(s)	248, 746
BmsI	GCATC	1 cut(s)	356
BmuI	ACTGGG	2 cut(s)	248, 746
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	55, 327, 711
BsaWI	WCCGGW	2 cut(s)	530, 873
BsaXI	ACNNNNNCTCC	4 cut(s)	512, 542, 850, 880
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 764
Bse118I	RCCGGY	1 cut(s)	809
Bse1I	ACTGG	7 cut(s)	254, 275, 319, 475, 595, 752, 907
Bse3DI	GCAATG	4 cut(s)	143, 155, 636, 811
BseAI	TCCGGA	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	55, 327, 711
BseGI	GGATG	2 cut(s)	249, 970
BseLI	CCNNNNNNNGG	2 cut(s)	738, 764
BseMI	GCAATG	4 cut(s)	143, 155, 636, 811
BseMII	CTCAG	2 cut(s)	513, 598
BseNI	ACTGG	7 cut(s)	254, 275, 319, 475, 595, 752, 907
BseRI	GAGGAG	1 cut(s)	858
BseXI	GCAGC	3 cut(s)	638, 866, 875
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	318, 750
BshVI	ATCGAT	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	842
BsiSI	CCGG	4 cut(s)	531, 686, 810, 874
BslI	CCNNNNNNNGG	2 cut(s)	738, 764
BsmAI	GTCTC	1 cut(s)	498
BsmBI	CGTCTC	1 cut(s)	498
BsnI	GGCC	2 cut(s)	318, 750
Bsp1286I	GDGCHC	1 cut(s)	842
Bsp13I	TCCGGA	1 cut(s)	530
Bsp143I	GATC	3 cut(s)	245, 652, 793
BspACI	CCGC	3 cut(s)	299, 379, 819
BspANI	GGCC	2 cut(s)	318, 750
BspCNI	CTCAG	2 cut(s)	512, 597
BspDI	ATCGAT	1 cut(s)	363
BspEI	TCCGGA	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	766
BspPI	GGATC	2 cut(s)	240, 253
BsrDI	GCAATG	4 cut(s)	143, 155, 636, 811
BsrFI	RCCGGY	1 cut(s)	809
BsrI	ACTGG	7 cut(s)	254, 275, 319, 475, 595, 752, 907
BssAI	RCCGGY	1 cut(s)	809
BssECI	CCNNGG	3 cut(s)	55, 327, 711
BssMI	GATC	3 cut(s)	245, 652, 793
BssT1I	CCWWGG	2 cut(s)	327, 711
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	5 cut(s)	109, 837, 848, 923, 935
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	499, 584
BstENI	CCTNNNNNAGG	1 cut(s)	736
BstF5I	GGATG	2 cut(s)	249, 970
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	3 cut(s)	248, 655, 796
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	3 cut(s)	245, 652, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	860, 863, 951
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	193, 684
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	638, 866, 875
BstX2I	RGATCY	1 cut(s)	245
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	779
BsuRI	GGCC	2 cut(s)	318, 750
BsuTUI	ATCGAT	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	249, 970
BveI	ACCTGC	1 cut(s)	766
Cac8I	GCNNGC	1 cut(s)	464
CaiI	CAGNNNCTG	2 cut(s)	47, 758
Cfr10I	RCCGGY	1 cut(s)	809
Cfr13I	GGNCC	1 cut(s)	749
ClaI	ATCGAT	1 cut(s)	363
CsiI	ACCWGGT	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	80, 755, 980
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	2 cut(s)	36, 436
CviQI	GTAC	3 cut(s)	80, 755, 980
DdeI	CTNAG	2 cut(s)	499, 584
DpnI	GATC	3 cut(s)	247, 654, 795
DpnII	GATC	3 cut(s)	245, 652, 793
DriI	GACNNNNNGTC	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	327, 711
Eco32I	GATATC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	736
EcoRI	GAATTC	2 cut(s)	136, 169
EcoRII	CCWGG	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	327, 711
ErhI	CCWWGG	2 cut(s)	327, 711
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	2 cut(s)	39, 439
FatI	CATG	2 cut(s)	35, 435
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	4 cut(s)	5, 627, 855, 864
FokI	GGATG	2 cut(s)	236, 977
Fsp4HI	GCNGC	4 cut(s)	5, 627, 855, 864
FspBI	CTAG	2 cut(s)	263, 290
GluI	GCNGC	4 cut(s)	5, 627, 855, 864
HaeIII	GGCC	2 cut(s)	318, 750
HapII	CCGG	4 cut(s)	531, 686, 810, 874
Hin1II	CATG	2 cut(s)	39, 439
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	4 cut(s)	386, 421, 574, 906
HpaI	GTTAAC	1 cut(s)	66
HpaII	CCGG	4 cut(s)	531, 686, 810, 874
HphI	GGTGA	4 cut(s)	194, 583, 696, 863
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	6 cut(s)	131, 579, 587, 698, 917, 973
Hpy188III	TCNNGA	4 cut(s)	243, 531, 542, 650
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	2 cut(s)	914, 917
HpyAV	CCTTC	4 cut(s)	367, 408, 442, 740
HpyCH4III	ACNGT	5 cut(s)	109, 837, 848, 923, 935
HpyCH4V	TGCA	6 cut(s)	24, 148, 226, 347, 761, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	860, 863, 951
HpyF3I	CTNAG	2 cut(s)	499, 584
Hsp92II	CATG	2 cut(s)	39, 439
Kpn2I	TCCGGA	1 cut(s)	530
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	245, 652, 793
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	3 cut(s)	638, 866, 875
LweI	GCATC	1 cut(s)	356
MabI	ACCWGGT	1 cut(s)	193
MaeI	CTAG	2 cut(s)	263, 290
MaeIII	GTNAC	1 cut(s)	898
MalI	GATC	3 cut(s)	247, 654, 795
MboI	GATC	3 cut(s)	245, 652, 793
MboII	GAAGA	5 cut(s)	107, 263, 272, 386, 416
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	842
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	6 cut(s)	136, 169, 293, 321, 664, 925
MluNI	TGGCCA	1 cut(s)	318
MmeI	TCCRAC	5 cut(s)	143, 468, 684, 895, 917
MnlI	CCTC	6 cut(s)	65, 70, 515, 593, 815, 879
Mox20I	TGGCCA	1 cut(s)	318
MroI	TCCGGA	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	136
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	5 cut(s)	17, 65, 600, 671, 723
MslI	CAYNNNNRTG	1 cut(s)	148
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	4 cut(s)	531, 686, 810, 874
MspR9I	CCNGG	2 cut(s)	195, 686
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	860, 863, 951
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	3 cut(s)	245, 652, 793
NlaIII	CATG	2 cut(s)	39, 439
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	39
PciI	ACATGT	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	136
PfeI	GAWTC	4 cut(s)	386, 421, 574, 906
PfoI	TCCNGGA	1 cut(s)	684
PkrI	GCNGC	4 cut(s)	6, 628, 856, 865
PscI	ACATGT	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	749
PstNI	CAGNNNCTG	2 cut(s)	47, 758
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	3 cut(s)	81, 756, 981
RsaNI	GTAC	3 cut(s)	80, 755, 980
RseI	CAYNNNNRTG	1 cut(s)	148
SaqAI	TTAA	5 cut(s)	17, 65, 600, 671, 723
SatI	GCNGC	4 cut(s)	5, 627, 855, 864
Sau3AI	GATC	3 cut(s)	245, 652, 793
Sau96I	GGNCC	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	195, 686
SduI	GDGCHC	1 cut(s)	842
SexAI	ACCWGGT	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	136, 169, 293, 321, 664, 925
SsiI	CCGC	3 cut(s)	299, 379, 819
SspMI	CTAG	2 cut(s)	263, 290
StyD4I	CCNGG	2 cut(s)	193, 684
StyI	CCWWGG	2 cut(s)	327, 711
TaaI	ACNGT	5 cut(s)	109, 837, 848, 923, 935
TaqI	TCGA	6 cut(s)	167, 363, 401, 507, 651, 930
TasI	AATT	6 cut(s)	136, 169, 293, 321, 664, 925
TfiI	GAWTC	4 cut(s)	386, 421, 574, 906
Tru1I	TTAA	5 cut(s)	17, 65, 600, 671, 723
Tru9I	TTAA	5 cut(s)	17, 65, 600, 671, 723
TseI	GCWGC	4 cut(s)	4, 626, 854, 863
TspDTI	ATGAA	6 cut(s)	101, 162, 195, 349, 424, 434
XagI	CCTNNNNNAGG	1 cut(s)	736
XapI	RAATTY	3 cut(s)	136, 169, 321
XceI	RCATGY	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	136
XspI	CTAG	2 cut(s)	263, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.