Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24126258 .. 24126912

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATGAGACCGTGGCAAATACTGATCTCAAAGGACAAGTGAACGTTGCAGTCGATGAGAAAGTCCATGTTGTGGAAAATGAGCAAGTCGTAATAAAGAATGAACAAGTAGAAGATCTGGCTGAGAAAGTGGACGTCATGGACGATGATCATCAGCAAGGACGTCGAGTGGAGGCTGACCGGGTCAGTAGTGATGAGCAAGTGATAGAAGTCGTGGATGCGGAGAAAGTAGACATGATGGACGACAATGATCAAGCAACACATGAACAACCAATTGTTTCGGAGAACCAGGAGAACTCTACTAAAAATGATGGATCTAATGATGATGAGCAGGATCCCGCACCAATGCTGCCTCGTGATCAACTGCCGGCCGTGGAGGCGCTCCAAACCCATGTGAAATCTGAAGTAGGCGGCGTTGCGGAGAAAGTAAACATGATGGACAACGATGATCAAGCAACACAAGAACAACCAATTGGTTTTTATGAGAAACAGGAGAATTTGACTAAAACTGATGAATCTAATGATGATGAAGAGCAGGATCTTGCAACAATGCTGCCTCATGATCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chloroa_b-bind Ferrochelatase

Protein Analysis

191

Amino Acids

21.34

Weight (kDa)

4.05

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	138, 166
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	4 cut(s)	221, 339, 411, 419
AclI	AACGTT	1 cut(s)	45
AclWI	GGATC	4 cut(s)	322, 329, 342, 546
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	2 cut(s)	135, 163
AfiI	CCNNNNNNNGG	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	288
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	4 cut(s)	322, 329, 342, 546
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	2 cut(s)	349, 553
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	334
BauI	CACGAG	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	336, 540
BccI	CCATC	3 cut(s)	232, 305, 430
BceAI	ACGGC	1 cut(s)	356
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	290
BclI	TGATCA	5 cut(s)	148, 250, 358, 448, 562
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	2
BfoI	RGCGCY	1 cut(s)	383
BglI	GCCNNNNNGGC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	3 cut(s)	350, 412, 554
BlsI	GCNGC	3 cut(s)	351, 413, 555
Bme1390I	CCNGG	2 cut(s)	182, 290
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	2 cut(s)	182, 290
BmsI	GCATC	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	150
BsaHI	GRCGYC	2 cut(s)	135, 163
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	2 cut(s)	12, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	12, 372
BseGI	GGATG	2 cut(s)	10, 223
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	336, 540
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	181, 368
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	2
BspACI	CCGC	4 cut(s)	221, 339, 411, 419
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	4 cut(s)	322, 329, 342, 546
BspQI	GCTCTTC	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	2
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	12, 372
BssNI	GRCGYC	2 cut(s)	135, 163
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	13, 570
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	2 cut(s)	135, 163
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	2 cut(s)	12, 372
BstF5I	GGATG	2 cut(s)	10, 223
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	2
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	180, 288
BstV1I	GCAGC	2 cut(s)	336, 540
BstX2I	RGATCY	4 cut(s)	115, 314, 334, 538
BstYI	RGATCY	4 cut(s)	115, 314, 334, 538
BstZI	CGGCCG	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	2 cut(s)	12, 372
BtsCI	GGATG	2 cut(s)	10, 223
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	367
CviAII	CATG	7 cut(s)	68, 139, 235, 263, 392, 433, 560
CviJI	RGCY	3 cut(s)	122, 176, 371
CviKI_1	RGCY	3 cut(s)	122, 176, 371
DdeI	CTNAG	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	369
EagI	CGGCCG	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
EclXI	CGGCCG	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	2
Eco52I	CGGCCG	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	7 cut(s)	71, 142, 238, 266, 395, 436, 563
FaiI	YATR	8 cut(s)	69, 140, 236, 264, 393, 434, 483, 561
FatI	CATG	7 cut(s)	67, 138, 234, 262, 391, 432, 559
FauI	CCCGC	1 cut(s)	346
FbaI	TGATCA	5 cut(s)	148, 250, 358, 448, 562
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	350, 412, 554
FokI	GGATG	2 cut(s)	17, 230
Fsp4HI	GCNGC	3 cut(s)	350, 412, 554
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	3 cut(s)	350, 412, 554
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	2 cut(s)	181, 368
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	2 cut(s)	135, 163
Hin1II	CATG	7 cut(s)	71, 142, 238, 266, 395, 436, 563
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	1 cut(s)	515
HpaII	CCGG	2 cut(s)	181, 368
Hpy166II	GTNNAC	4 cut(s)	43, 133, 232, 430
Hpy188I	TCNGA	2 cut(s)	283, 403
Hpy188III	TCNNGA	2 cut(s)	356, 560
Hpy8I	GTNNAC	4 cut(s)	43, 133, 232, 430
Hpy99I	CGWCG	1 cut(s)	168
HpyCH4III	ACNGT	2 cut(s)	13, 570
HpyCH4IV	ACGT	3 cut(s)	45, 135, 163
HpyCH4V	TGCA	2 cut(s)	50, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	3 cut(s)	45, 135, 163
Hsp92I	GRCGYC	2 cut(s)	135, 163
Hsp92II	CATG	7 cut(s)	71, 142, 238, 266, 395, 436, 563
HspAI	GCGC	1 cut(s)	380
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Ksp22I	TGATCA	5 cut(s)	148, 250, 358, 448, 562
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	8 cut(s)	104, 194, 275, 302, 317, 381, 476, 521
Lsp1109I	GCAGC	2 cut(s)	336, 540
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	3 cut(s)	45, 135, 163
MboII	GAAGA	2 cut(s)	125, 542
MfeI	CAATTG	2 cut(s)	273, 471
MflI	RGATCY	4 cut(s)	115, 314, 334, 538
MluCI	AATT	3 cut(s)	273, 471, 496
MnlI	CCTC	4 cut(s)	166, 363, 370, 567
MroNI	GCCGGC	1 cut(s)	367
MspI	CCGG	2 cut(s)	181, 368
MspR9I	CCNGG	2 cut(s)	182, 290
MunI	CAATTG	2 cut(s)	273, 471
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	377
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	1 cut(s)	182
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	7 cut(s)	71, 142, 238, 266, 395, 436, 563
NlaIV	GGNNCC	1 cut(s)	336
PagI	TCATGA	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 141
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	515
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	351, 413, 555
Psp1406I	AACGTT	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	336
PsuI	RGATCY	4 cut(s)	115, 314, 334, 538
PsyI	GACNNNGTC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	525
SatI	GCNGC	3 cut(s)	350, 412, 554
ScrFI	CCNGG	2 cut(s)	182, 290
SetI	ASST	3 cut(s)	48, 138, 166
SfaNI	GCATC	1 cut(s)	208
Sse9I	AATT	3 cut(s)	273, 471, 496
SsiI	CCGC	4 cut(s)	221, 339, 411, 419
StyD4I	CCNGG	2 cut(s)	180, 288
TaaI	ACNGT	2 cut(s)	13, 570
TaiI	ACGT	3 cut(s)	48, 138, 166
TaqI	TCGA	2 cut(s)	54, 166
TasI	AATT	3 cut(s)	273, 471, 496
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	1 cut(s)	515
TseI	GCWGC	2 cut(s)	349, 553
TspDTI	ATGAA	4 cut(s)	117, 279, 528, 543
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	231
ZraI	GACGTC	2 cut(s)	136, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.