Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001315

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24394 .. 24843

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGGAGAATTCACGAGCGTGTACTTGGATCCAGAAGGACTGGAATTTCTTCTGCTAGTGACATATGGCTTCTTGGTGTGTGCTATAAGGTCTCACAAGATGATTCCTCTGGAGATGCACCTATTGATAATGGATTAGGAGCATTTGAACAGGATTTCTCATCAAGAATTTTGATGACATATCGTAAAGGTTTGGCTTTTCTAGGATTTGAGGCTATTGGAGATTCAAAGTACACTAGTGATGTAAATTGGGGTTGCATGCTTCGGAGTAGTCAGATGCTTGTAGCCCAGGTATGGTACAGTGTTTTATCCATTTTGGGTTCTTGCATTCTTACGTGGTTAATAACTGGTACATGTGTGAATGTTATTGTTAAGGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000422 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006501 GO:0006508 GO:0006605 GO:0006612 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0016236 GO:0016787 GO:0018410 GO:0019538 GO:0022411 GO:0022607 GO:0033036 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042886 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051697 GO:0061726 GO:0061919 GO:0070011 GO:0070727 GO:0070925 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0090150 GO:0140096 GO:1901564 GO:1901566 GO:1901576 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Peptidase_C54

Protein Analysis

128

Amino Acids

13.99

Weight (kDa)

7.65

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C54	PF03416	48 - 100	2.4e-16	Peptidase C54 catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	24, 37
AcsI	RAATTY	3 cut(s)	9, 45, 168
AfaI	GTAC	4 cut(s)	24, 233, 299, 352
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflIII	ACRYGT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	149, 228
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	288
AleI	CACNNNNGTG	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	2 cut(s)	24, 37
ApoI	RAATTY	3 cut(s)	9, 45, 168
Asp700I	GAANNNNTTC	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BamHI	GGATCC	1 cut(s)	29
BauI	CACGAG	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	97
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	3 cut(s)	57, 203, 237
Bme1390I	CCNGG	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	106, 267
BpmI	CTGGAG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	2 cut(s)	46, 352
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	46, 352
BseRI	GAGGAG	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	327
Bso31I	GGTCTC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	24, 37
BspTNI	GGTCTC	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	46, 352
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	1 cut(s)	29
BssSI	CACGAG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	2 cut(s)	262, 357
BstSCI	CCNGG	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	260
Csp6I	GTAC	4 cut(s)	23, 232, 298, 351
CviAII	CATG	2 cut(s)	259, 354
CviJI	RGCY	4 cut(s)	70, 197, 215, 287
CviKI_1	RGCY	4 cut(s)	70, 197, 215, 287
CviQI	GTAC	4 cut(s)	23, 232, 298, 351
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	262, 357
FaiI	YATR	7 cut(s)	65, 67, 87, 181, 260, 295, 355
FatI	CATG	2 cut(s)	258, 353
FauNDI	CATATG	1 cut(s)	65
FspBI	CTAG	3 cut(s)	57, 203, 237
GsuI	CTGGAG	1 cut(s)	132
Hin1II	CATG	2 cut(s)	262, 357
HinfI	GANTC	2 cut(s)	104, 224
Hpy166II	GTNNAC	2 cut(s)	23, 234
Hpy188I	TCNGA	2 cut(s)	267, 276
Hpy188III	TCNNGA	5 cut(s)	14, 33, 111, 165, 381
Hpy8I	GTNNAC	2 cut(s)	23, 234
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	3 cut(s)	119, 258, 327
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	262, 357
Kzo9I	GATC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	7 cut(s)	27, 46, 96, 137, 275, 302, 333
LweI	GCATC	2 cut(s)	106, 267
MaeI	CTAG	3 cut(s)	57, 203, 237
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	1 cut(s)	42
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	4 cut(s)	9, 45, 168, 247
MnlI	CCTC	2 cut(s)	118, 205
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	2 cut(s)	341, 372
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	290
NdeI	CATATG	1 cut(s)	65
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	262, 357
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	2 cut(s)	262, 357
OliI	CACNNNNGTG	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	262
PciI	ACATGT	1 cut(s)	353
PctI	GAATGC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	104, 224
Ppu21I	YACGTR	1 cut(s)	336
PscI	ACATGT	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	4 cut(s)	24, 233, 299, 352
RsaNI	GTAC	4 cut(s)	23, 232, 298, 351
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	341, 372
Sau3AI	GATC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	6 cut(s)	93, 124, 193, 294, 338, 378
SfaNI	GCATC	2 cut(s)	106, 267
SmiMI	CAYNNNNRTG	1 cut(s)	18
SpeI	ACTAGT	1 cut(s)	236
SphI	GCATGC	1 cut(s)	262
Sse9I	AATT	4 cut(s)	9, 45, 168, 247
SspMI	CTAG	3 cut(s)	57, 203, 237
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	338
TasI	AATT	4 cut(s)	9, 45, 168, 247
TatI	WGTACW	2 cut(s)	22, 231
TfiI	GAWTC	2 cut(s)	104, 224
Tru1I	TTAA	2 cut(s)	341, 372
Tru9I	TTAA	2 cut(s)	341, 372
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	3 cut(s)	9, 45, 168
XceI	RCATGY	2 cut(s)	262, 357
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	3 cut(s)	57, 203, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.