pycom1315g00040

Ethylbenzene dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001315
N/A
Physical Location & Seq
Forward (+)
36810 .. 37154
345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGGCATCAAAATCAAATCCAAAAGTAGAGAATATGAAGAGTTTTTACAGGCAAAGGAAAAGCACTAGCACTGGTGGTACCTCTAAGAAGAAAAAATCCCATTCGGCCGCTCACCCAAAAGCTACTGCGGCCTTTTTCGGCTCAGGTGTAATTTCACACGGCTCTCTGGACCTCAAAGTCTTGTTGTGTGAATATTTGTTATGGTTTTCACTACCCATTTCCTTGTTCATGTATTGTATCCACTCCGTTGCCAAATTCCTTCTAATCTTCCGTTGTTGGGCGTCCCAACCATTTTTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EB_dh

Protein Analysis

101

Amino Acids

11.22

Weight (kDa)

10.03

Isoelectric Point (pI)

26.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 110
AciI CCGC 2 cut(s) 108, 128
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 277
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AoxI GGCC 2 cut(s) 105, 129
ApoI RAATTY 1 cut(s) 254
Asp718I GGTACC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
BceAI ACGGC 1 cut(s) 175
BciVI GTATCC 1 cut(s) 248
BfaI CTAG 1 cut(s) 66
BfuI GTATCC 1 cut(s) 248
BisI GCNGC 2 cut(s) 108, 129
BlsI GCNGC 2 cut(s) 109, 130
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 76
BseX3I CGGCCG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 107, 131
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 2 cut(s) 107, 131
BspACI CCGC 2 cut(s) 108, 128
BspANI GGCC 2 cut(s) 107, 131
BspCNI CTCAG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 84, 142
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstZI CGGCCG 1 cut(s) 105
BsuI GTATCC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 107, 131
BtsIMutI CAGTG 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 78
CviAII CATG 1 cut(s) 229
CviJI RGCY 5 cut(s) 107, 122, 131, 141, 162
CviKI_1 RGCY 5 cut(s) 107, 122, 131, 141, 162
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 84, 142
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EclXI CGGCCG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 169
Eco52I CGGCCG 1 cut(s) 105
FaeI CATG 1 cut(s) 232
FaiI YATR 3 cut(s) 35, 202, 230
FaqI GGGAC 1 cut(s) 268
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 108, 129
Fsp4HI GCNGC 2 cut(s) 108, 129
FspBI CTAG 1 cut(s) 66
GluI GCNGC 2 cut(s) 108, 129
HaeIII GGCC 2 cut(s) 107, 131
HgaI GACGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 1 cut(s) 232
HphI GGTGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 84, 142
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 1 cut(s) 232
KpnI GGTACC 1 cut(s) 81
LpnPI CCDG 4 cut(s) 34, 57, 129, 152
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 66
MbiI CCGCTC 1 cut(s) 110
MboII GAAGA 3 cut(s) 49, 100, 259
MluCI AATT 2 cut(s) 150, 254
MnlI CCTC 2 cut(s) 91, 182
MwoI GCNNNNNNNGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 109, 130
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 169
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SatI GCNGC 2 cut(s) 108, 129
Sau96I GGNCC 1 cut(s) 169
SetI ASST 4 cut(s) 83, 124, 148, 174
SfaNI GCATC 1 cut(s) 14
SgeI CNNG 9 cut(s) 61, 78, 84, 156, 170, 179, 193, 235, 241
SinI GGWCC 1 cut(s) 169
Sse9I AATT 2 cut(s) 150, 254
SsiI CCGC 2 cut(s) 108, 128
SspI AATATT 1 cut(s) 194
SspMI CTAG 1 cut(s) 66
TasI AATT 2 cut(s) 150, 254
TauI GCSGC 2 cut(s) 110, 131
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 50, 217
TspGWI ACGGA 2 cut(s) 235, 260
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 254
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.