Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000133

Orthogroup ID

OG0029353

Physical Location & Seq

Genomic Coordinates Reverse (-)

156448 .. 157449

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTACACAACTAGAAATCTAATACCAATACTTTTACCCCTTTTTCTTCTTCAAATTCCACTTTCCACAGCTTTCTCCCTAAGCCCCATGAACTGTACGGACACAACTTGCCTATGTACCTCCTTTTCGGCCTTTAAGCCGAAACCCAATGACTCTGCTAGTGATTTAGAGCTAGCTTCCAAAAATCAACCACAACATTTCAGGAGTCCAAGAGCAGAGGGGCTGAACCAGCGCTCCAGGTTTATTTGTCCGGCGAAGGGAGTGGTGGCCACCACTCCTCGCCCTCACGTGGCTTCGCCACTGATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031348 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

104

Amino Acids

11.26

Weight (kDa)

9.43

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029353)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17550 pycom133g00070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	54
AcvI	CACGTG	1 cut(s)	289
AfaI	GTAC	3 cut(s)	5, 97, 118
AfeI	AGCGCT	1 cut(s)	233
AfiI	CCNNNNNNNGG	3 cut(s)	257, 289, 305
AgsI	TTSAA	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	236
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	3 cut(s)	71, 172, 176
AluI	AGCT	3 cut(s)	71, 172, 176
Aor51HI	AGCGCT	1 cut(s)	233
AoxI	GGCC	2 cut(s)	129, 267
ApoI	RAATTY	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	234
AsuNHI	GCTAGC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	269
BbrPI	CACGTG	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	238
BfaI	CTAG	3 cut(s)	12, 159, 173
BfoI	RGCGCY	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	238
BmtI	GCTAGC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 289, 305
BseBI	CCWGG	1 cut(s)	238
BseLI	CCNNNNNNNGG	3 cut(s)	257, 289, 305
BseRI	GAGGAG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	131, 269
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	257, 289, 305
BsnI	GGCC	2 cut(s)	131, 269
Bsp1407I	TGTACA	1 cut(s)	3
BspANI	GGCC	2 cut(s)	131, 269
BspOI	GCTAGC	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	131, 269
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	4, 96, 117
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	9 cut(s)	71, 84, 131, 139, 172, 176, 223, 269, 293
CviKI_1	RGCY	9 cut(s)	71, 84, 131, 139, 172, 176, 223, 269, 293
CviQI	GTAC	3 cut(s)	4, 96, 117
DdeI	CTNAG	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	267
Eco47III	AGCGCT	1 cut(s)	233
Eco72I	CACGTG	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	236
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	89, 115
FatI	CATG	1 cut(s)	87
FspBI	CTAG	3 cut(s)	12, 159, 173
GlaI	GCGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	235
HaeIII	GGCC	2 cut(s)	131, 269
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	2 cut(s)	152, 205
HpaII	CCGG	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	187, 223, 242, 250, 264
MaeI	CTAG	3 cut(s)	12, 159, 173
MaeII	ACGT	1 cut(s)	288
MboII	GAAGA	2 cut(s)	38, 41
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	146, 214
MnlI	CCTC	4 cut(s)	130, 211, 288, 294
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	229
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	305
PleI	GAGTC	2 cut(s)	146, 213
PmaCI	CACGTG	1 cut(s)	289
PmlI	CACGTG	1 cut(s)	289
PpsI	GAGTC	2 cut(s)	146, 213
Ppu21I	YACGTR	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	236
PspCI	CACGTG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	236
RsaI	GTAC	3 cut(s)	5, 97, 118
RsaNI	GTAC	3 cut(s)	4, 96, 117
SaqAI	TTAA	1 cut(s)	135
SchI	GAGTC	2 cut(s)	146, 214
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	6 cut(s)	73, 122, 174, 178, 242, 291
Sse9I	AATT	1 cut(s)	54
SspMI	CTAG	3 cut(s)	12, 159, 173
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	291
TasI	AATT	1 cut(s)	54
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	306
TspDTI	ATGAA	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	306
Van91I	CCANNNNNTGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	54
XspI	CTAG	3 cut(s)	12, 159, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.