Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

81461 .. 86130

Gene Structure 4670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATTTGGACCAGTGGATCTCAAAGGTGAAGGAAGGACAGCATCTCTTGGAGGACGAGCTTCAACTCCTATGCGAATACGTAAAAGAGATTCTTATTGAGGAGTCCAATGTGCAACCTGTAAACAGTCCGGTCACAGTTTGTGGTGATATTCATGGCCAATTCCACGACCTAATGAAACTTTTCCAGACTGGAGGCCATGTACCGGAGACAAATTACATATTTATGGGTGATTTTGTTGATCGAGGTTACAATAGCCTTGAAGTTTTCACTATCCTTTTGCTTCTTAAGGCGAGATATCCAGCTAATATTACCCTTTTGCGTGGTAATCATGAAAGCAGGCAACTTACCCAGGTATATGGCTTTTATGACGAATGCCAGAGGAAGTATGGAAATGCTAATGCCTGGCGGTATTGTACAGATGTTTTCGACTATTTGACGCTGTCGGCAATTATAGATGGAACTGTGCTGTGTGTCCATGGTGGACTTTCTCCTGACATCCGAACAATTGATCAGATACGGGTCGTTGAGCGAAATTGTGAAATTCCACATGAGGGGCCATTTTGTGATCGATCATGTGGAGCGATCCTGAAGATATTAAAACATGGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008287 GO:0009909 GO:0009910 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1903293 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

205

Amino Acids

23.31

Weight (kDa)

5.19

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	44 - 190	7.3e-36	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	2 cut(s)	26, 580
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	611
AfaI	GTAC	2 cut(s)	204, 418
AfiI	CCNNNNNNNGG	2 cut(s)	205, 554
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	65, 263
AjnI	CCWGG	2 cut(s)	351, 404
AluBI	AGCT	2 cut(s)	61, 305
AluI	AGCT	2 cut(s)	61, 305
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	2 cut(s)	26, 580
AoxI	GGCC	3 cut(s)	157, 196, 557
ApoI	RAATTY	1 cut(s)	543
Asp700I	GAANNNNTTC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	10, 557
AsuHPI	GGTGA	3 cut(s)	40, 158, 242
AvaII	GGWCC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	159
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	2 cut(s)	353, 406
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	203
BfrI	CTTAAG	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	353, 406
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	10, 557
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	2 cut(s)	353, 406
BmsI	GCATC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	571
BsaAI	YACGTR	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	351, 478
BsaWI	WCCGGW	2 cut(s)	130, 205
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 554
Bse1I	ACTGG	2 cut(s)	13, 196
BseBI	CCWGG	2 cut(s)	353, 406
BseCI	ATCGAT	1 cut(s)	571
BseDI	CCNNGG	2 cut(s)	351, 478
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	205, 554
BseNI	ACTGG	2 cut(s)	13, 196
BseRI	GAGGAG	1 cut(s)	116
BshFI	GGCC	3 cut(s)	159, 198, 559
BshVI	ATCGAT	1 cut(s)	571
BsiSI	CCGG	2 cut(s)	131, 206
BslI	CCNNNNNNNGG	2 cut(s)	205, 554
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	159, 198, 559
Bsp1407I	TGTACA	1 cut(s)	416
Bsp143I	GATC	6 cut(s)	18, 241, 511, 568, 572, 585
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	3 cut(s)	159, 198, 559
BspDI	ATCGAT	1 cut(s)	571
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	2 cut(s)	26, 580
BspTI	CTTAAG	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	13, 196
BssECI	CCNNGG	2 cut(s)	351, 478
BssMI	GATC	6 cut(s)	18, 241, 511, 568, 572, 585
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	2 cut(s)	353, 406
Bst4CI	ACNGT	3 cut(s)	128, 139, 466
BstAFI	CTTAAG	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	341
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	1 cut(s)	498
BstKTI	GATC	6 cut(s)	21, 244, 514, 571, 575, 588
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	6 cut(s)	18, 241, 511, 568, 572, 585
BstNI	CCWGG	2 cut(s)	353, 406
BstSCI	CCNGG	2 cut(s)	351, 404
BstSNI	TACGTA	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	18
Bsu15I	ATCGAT	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	159, 198, 559
BsuTUI	ATCGAT	1 cut(s)	571
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	341
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	10, 557
ClaI	ATCGAT	1 cut(s)	571
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	203, 417
CviAII	CATG	7 cut(s)	155, 200, 332, 479, 551, 576, 605
CviJI	RGCY	7 cut(s)	61, 159, 198, 258, 305, 363, 559
CviKI_1	RGCY	7 cut(s)	61, 159, 198, 258, 305, 363, 559
CviQI	GTAC	2 cut(s)	203, 417
DpnI	GATC	6 cut(s)	20, 243, 513, 570, 574, 587
DpnII	GATC	6 cut(s)	18, 241, 511, 568, 572, 585
EaeI	YGGCCR	1 cut(s)	157
Eco105I	TACGTA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	351, 404
EcoRV	GATATC	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	7 cut(s)	158, 203, 335, 482, 554, 579, 608
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	7 cut(s)	154, 199, 331, 478, 550, 575, 604
FbaI	TGATCA	1 cut(s)	511
FokI	GGATG	1 cut(s)	485
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	159, 198, 559
HapII	CCGG	2 cut(s)	131, 206
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	7 cut(s)	158, 203, 335, 482, 554, 579, 608
HinfI	GANTC	2 cut(s)	91, 104
HpaII	CCGG	2 cut(s)	131, 206
HphI	GGTGA	3 cut(s)	40, 158, 242
Hpy166II	GTNNAC	2 cut(s)	124, 485
Hpy188I	TCNGA	2 cut(s)	503, 516
Hpy188III	TCNNGA	4 cut(s)	187, 332, 494, 589
Hpy8I	GTNNAC	2 cut(s)	124, 485
HpyAV	CCTTC	2 cut(s)	25, 29
HpyCH4III	ACNGT	3 cut(s)	128, 139, 466
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	7 cut(s)	158, 203, 335, 482, 554, 579, 608
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	6 cut(s)	18, 241, 511, 568, 572, 585
LmnI	GCTCC	1 cut(s)	581
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	133, 248
MalI	GATC	6 cut(s)	20, 243, 513, 570, 574, 587
MboI	GATC	6 cut(s)	18, 241, 511, 568, 572, 585
MboII	GAAGA	1 cut(s)	604
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	6 cut(s)	161, 214, 450, 507, 535, 543
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	6 cut(s)	46, 94, 188, 239, 375, 547
Mox20I	TGGCCA	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	2 cut(s)	288, 599
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	2 cut(s)	131, 206
MspR9I	CCNGG	2 cut(s)	353, 406
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	2 cut(s)	353, 406
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	6 cut(s)	18, 241, 511, 568, 572, 585
NlaIII	CATG	7 cut(s)	158, 203, 335, 482, 554, 579, 608
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	331
PctI	GAATGC	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	351, 404
PspGI	CCWGG	2 cut(s)	351, 404
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	2 cut(s)	10, 557
PsuI	RGATCY	1 cut(s)	18
PsyI	GACNNNGTC	1 cut(s)	442
RsaI	GTAC	2 cut(s)	204, 418
RsaNI	GTAC	2 cut(s)	203, 417
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	288, 599
Sau3AI	GATC	6 cut(s)	18, 241, 511, 568, 572, 585
Sau96I	GGNCC	2 cut(s)	10, 557
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	353, 406
SetI	ASST	8 cut(s)	30, 63, 84, 121, 174, 250, 307, 357
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SnaBI	TACGTA	1 cut(s)	82
Sse9I	AATT	6 cut(s)	161, 214, 450, 507, 535, 543
SsiI	CCGC	1 cut(s)	409
SspI	AATATT	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	351, 404
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	3 cut(s)	128, 139, 466
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	244, 429, 571
TasI	AATT	6 cut(s)	161, 214, 450, 507, 535, 543
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	288, 599
Tru9I	TTAA	2 cut(s)	288, 599
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	143, 191, 348
TspRI	CASTG	1 cut(s)	20
Tth111I	GACNNNGTC	1 cut(s)	442
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.