Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

135447 .. 137131

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCAAGCGAGTTATATCAGTCGGTGACTCCTCATTTTTCTTGGGGCGGTGAAGTATTTTGGGCCGGTCGGCATCGAAAGTCAGGTATCGGTTATGCGGCTCGGTTCAACACTGAAAAGATGGTTGCCACAGGGCAGGTTGCTAGCACTGGAATGCTTGCATTGAGCTATGTTCAGAAAGTATCTGACAAGGTTTCACTAGCGTCAGACCTCATGTACAACCACATGTCAAGAGATGTCACAGCAAGTGTTGGCTATGATTACGTCTTCAGACAGAGTCGTGTTAGAGGGAAGATTGGTTCCAAGGGCTGCACGGCTGCTTATCTTGAAGACAGATTAATACGGGTCTTAAGTTTATTCTTTCTGCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

125

Amino Acids

13.91

Weight (kDa)

9.93

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	5 - 117	7.5e-24	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AciI	CCGC	3 cut(s)	48, 98, 367
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	1 cut(s)	218
AflII	CTTAAG	1 cut(s)	349
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	109, 329
AloI	GAACNNNNNNTCC	2 cut(s)	283, 315
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	309, 317
AseI	ATTAAT	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	37, 62
AsuNHI	GCTAGC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	259, 336
BbvI	GCAGC	2 cut(s)	296, 304
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	330
BfaI	CTAG	2 cut(s)	144, 200
BfrI	CTTAAG	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	99, 310, 318
BlsI	GCNGC	3 cut(s)	100, 311, 319
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	82
BmtI	GCTAGC	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	259, 336
BsaJI	CCNNGG	1 cut(s)	303
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	296, 304
BsgI	GTGCAG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	216
BspACI	CCGC	3 cut(s)	48, 98, 367
BspANI	GGCC	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	147
BspTI	CTTAAG	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	349
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	145, 159
BstMCI	CGRYCG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	296, 304
BstV2I	GAAGAC	2 cut(s)	259, 336
BsuRI	GGCC	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	111, 147
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	145, 159
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	63
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	214, 226
CviJI	RGCY	6 cut(s)	65, 101, 168, 255, 309, 317
CviKI_1	RGCY	6 cut(s)	65, 101, 168, 255, 309, 317
CviQI	GTAC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	217, 229
FaiI	YATR	6 cut(s)	16, 96, 171, 215, 227, 258
FatI	CATG	2 cut(s)	213, 225
Fnu4HI	GCNGC	3 cut(s)	99, 310, 318
Fsp4HI	GCNGC	3 cut(s)	99, 310, 318
FspBI	CTAG	2 cut(s)	144, 200
GluI	GCNGC	3 cut(s)	99, 310, 318
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	217, 229
HinfI	GANTC	2 cut(s)	28, 277
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	2 cut(s)	37, 62
Hpy188I	TCNGA	4 cut(s)	177, 187, 208, 272
Hpy188III	TCNNGA	2 cut(s)	231, 326
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	161, 312
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	217, 229
LpnPI	CCDG	5 cut(s)	69, 79, 117, 122, 135
Lsp1109I	GCAGC	2 cut(s)	296, 304
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	144, 200
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	25, 238
MboII	GAAGA	3 cut(s)	259, 304, 341
MlyI	GAGTC	2 cut(s)	22, 286
MnlI	CCTC	4 cut(s)	42, 221, 281, 363
MseI	TTAA	2 cut(s)	338, 350
MslI	CAYNNNNRTG	1 cut(s)	152
MspCI	CTTAAG	1 cut(s)	349
MspI	CCGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	217, 229
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	25, 238
NspI	RCATGY	1 cut(s)	229
PciI	ACATGT	1 cut(s)	225
PctI	GAATGC	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	100, 311, 319
PleI	GAGTC	2 cut(s)	22, 285
PpsI	GAGTC	2 cut(s)	22, 285
PscI	ACATGT	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	63
PsyI	GACNNNGTC	1 cut(s)	276
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	338, 350
SatI	GCNGC	3 cut(s)	99, 310, 318
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	2 cut(s)	22, 286
SetI	ASST	7 cut(s)	88, 141, 170, 195, 213, 267, 374
SfaNI	GCATC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SsiI	CCGC	3 cut(s)	48, 98, 367
SspMI	CTAG	2 cut(s)	144, 200
StyI	CCWWGG	1 cut(s)	303
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	76
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	338, 350
Tru9I	TTAA	2 cut(s)	338, 350
TscAI	CASTG	2 cut(s)	118, 154
TseFI	GTSAC	2 cut(s)	25, 238
TseI	GCWGC	2 cut(s)	309, 317
Tsp45I	GTSAC	2 cut(s)	25, 238
TspRI	CASTG	2 cut(s)	118, 154
Tth111I	GACNNNGTC	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	338
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	2 cut(s)	144, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.