Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

570989 .. 571408

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGACCGTTGGTTTTAGGTTTTACCCTAATAGAGTCTCCTTCAAAGTCACTCTAACCTCCGATCCGAAGCTCCTCTTCAAAGTGTTTAGCGTGCCGGAAGCAGCCCCTTTCACCGCCGTGCTGAAATTCGCGGCCGAGGAATTCAAAGTGCCTCCCCAAACCAGCGCTATCATCACCAACGGTAATTTGACTTCTGGGCTTTTGCATGTCGCTGTTGATTTCATTTTTGGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071569 GO:0071704 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ufm1

Protein Analysis

79

Amino Acids

8.52

Weight (kDa)

9.3

Isoelectric Point (pI)

15.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufm1	PF03671	11 - 60	6.5e-24	Ubiquitin fold modifier 1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	2 cut(s)	114, 131
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	2 cut(s)	125, 140
AfeI	AGCGCT	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	43, 79, 145
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	56
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	125, 140
AspLEI	GCGC	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	103, 166
BarI	GAAGNNNNNNTAC	2 cut(s)	175, 207
BbvI	GCAGC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	40
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	2 cut(s)	102, 132
BlsI	GCNGC	2 cut(s)	103, 133
BsaJI	CCNNGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	2 cut(s)	114, 131
BspANI	GGCC	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	131
BspPI	GGATC	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	7, 182
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	61
BstMCI	CGRYCG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	209
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	113
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	92
CfoI	GCGC	1 cut(s)	167
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	5 cut(s)	70, 104, 134, 199, 231
CviKI_1	RGCY	5 cut(s)	70, 104, 134, 199, 231
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EclXI	CGGCCG	1 cut(s)	132
Eco47III	AGCGCT	1 cut(s)	166
Eco52I	CGGCCG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	140
FaeI	CATG	1 cut(s)	209
FaiI	YATR	1 cut(s)	207
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	102, 132
Fsp4HI	GCNGC	2 cut(s)	102, 132
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	102, 132
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	103, 166
Hpy188I	TCNGA	2 cut(s)	61, 66
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	7, 182
HpyCH4V	TGCA	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	3 cut(s)	108, 175, 180
Lsp1109I	GCAGC	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	67
MluCI	AATT	3 cut(s)	125, 140, 184
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	4 cut(s)	67, 83, 130, 162
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	131
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	209
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	103, 133
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	2 cut(s)	102, 132
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	42
SetI	ASST	3 cut(s)	20, 59, 72
SgeI	CNNG	8 cut(s)	103, 107, 130, 142, 148, 174, 207, 218
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	125, 140, 184
SsiI	CCGC	2 cut(s)	114, 131
TaaI	ACNGT	2 cut(s)	7, 182
TasI	AATT	3 cut(s)	125, 140, 184
TauI	GCSGC	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	211
XapI	RAATTY	2 cut(s)	125, 140
XceI	RCATGY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.