Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

742454 .. 743609

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCAGCCGAGGGAACGTCGAAGAAGATGATAGCGACGCAGGCGGAGATGGTGGAGAATCGGGTGCCAATTCCGTACAGAGACCAGTGCGCCCACTTGCTCGATCCCTCTGAACAAGTGCAGGCAGGCGGAGCTCTACCTCCCATGGAAGTGCGAGAACGAGCGCCACTCTTACGAGAAGTGCGAGTACGAGCTCGTCATGGAGAGGATGCTCGCGATGCAGAAGATCCGCGAGGAGGCCAAGTTGAAGCAGGGAAAGAAGAAGGGGCAGCCGATTCCTCTCATTCCCAACACCGCCAACGCTTAGAACCCACCATCCGTTATTGGCCTATGTTTTCACCTGAGCTTGTCCAACTGTACTCTTTGCTTATTAGAGAAGACAATGCAAGACAAATCTATGAGGATGTGTATAGTTGGAGGGATTTATTTGGGTGTAAGGCTAGTAACTGGAAATTTGTTCTTATTGCTTTATATGGGTTGGTCCTAATTGCCTATCATCCCTATATTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUF_B7

Protein Analysis

171

Amino Acids

19.41

Weight (kDa)

5.76

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B7	PF05676	11 - 36	2.2e-06	NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AccII	CGCG	2 cut(s)	216, 232
AciI	CCGC	4 cut(s)	44, 129, 230, 295
AclWI	GGATC	2 cut(s)	98, 221
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	3 cut(s)	77, 189, 359
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	248
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	134, 194, 346
AluI	AGCT	3 cut(s)	134, 194, 346
Alw21I	GWGCWC	2 cut(s)	136, 196
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	98, 221
AoxI	GGCC	2 cut(s)	238, 326
ApeKI	GCWGC	2 cut(s)	5, 269
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	2 cut(s)	92, 166
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	2 cut(s)	136, 196
BarI	GAAGNNNNNNTAC	2 cut(s)	171, 203
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	2 cut(s)	136, 196
BbvI	GCAGC	2 cut(s)	17, 281
BccI	CCATC	2 cut(s)	43, 323
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	167
BisI	GCNGC	2 cut(s)	6, 270
BlsI	GCNGC	2 cut(s)	7, 271
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	2 cut(s)	199, 208
BpiI	GAAGAC	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
Bpu10I	CCTNAGC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	9, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	85, 452
BseDI	CCNNGG	2 cut(s)	9, 144
BseGI	GGATG	4 cut(s)	214, 315, 409, 496
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	85, 452
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	17, 281
BsgI	GTGCAG	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	216, 232
BshFI	GGCC	2 cut(s)	240, 328
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	136, 196
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	240, 328
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	136, 196
Bsp143I	GATC	2 cut(s)	103, 226
Bsp19I	CCATGG	1 cut(s)	144
Bsp68I	TCGCGA	1 cut(s)	216
BspACI	CCGC	4 cut(s)	44, 129, 230, 295
BspANI	GGCC	2 cut(s)	240, 328
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	2 cut(s)	216, 232
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	98, 221
BspT107I	GGYRCC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	85, 452
BssECI	CCNNGG	2 cut(s)	9, 144
BssMI	GATC	2 cut(s)	103, 226
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	357
BstC8I	GCNNGC	4 cut(s)	42, 123, 127, 214
BstDEI	CTNAG	2 cut(s)	304, 342
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	4 cut(s)	214, 315, 409, 496
BstFNI	CGCG	2 cut(s)	216, 232
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	92, 166
BstKTI	GATC	2 cut(s)	106, 229
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	103, 226
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 131, 218
BstUI	CGCG	2 cut(s)	216, 232
BstV1I	GCAGC	2 cut(s)	17, 281
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	240, 328
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	4 cut(s)	214, 315, 409, 496
BtsIMutI	CAGTG	1 cut(s)	92
BtuMI	TCGCGA	1 cut(s)	216
Cac8I	GCNNGC	4 cut(s)	42, 123, 127, 214
CfoI	GCGC	2 cut(s)	92, 166
Cfr13I	GGNCC	1 cut(s)	481
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	76, 188, 358
CviAII	CATG	2 cut(s)	145, 200
CviJI	RGCY	8 cut(s)	8, 134, 194, 240, 272, 328, 346, 440
CviKI_1	RGCY	8 cut(s)	8, 134, 194, 240, 272, 328, 346, 440
CviQI	GTAC	3 cut(s)	76, 188, 358
DdeI	CTNAG	2 cut(s)	304, 342
DpnI	GATC	2 cut(s)	105, 228
DpnII	GATC	2 cut(s)	103, 226
EciI	GGCGGA	2 cut(s)	59, 144
Ecl136II	GAGCTC	2 cut(s)	134, 194
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	136, 196
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	2 cut(s)	134, 194
EcoICRI	GAGCTC	2 cut(s)	134, 194
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	136, 196
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	148, 203
FaiI	YATR	8 cut(s)	146, 201, 332, 399, 411, 472, 474, 504
FatI	CATG	2 cut(s)	144, 199
Fnu4HI	GCNGC	2 cut(s)	6, 270
FokI	GGATG	4 cut(s)	221, 302, 416, 483
FriOI	GRGCYC	2 cut(s)	136, 196
Fsp4HI	GCNGC	2 cut(s)	6, 270
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	2 cut(s)	91, 165
GluI	GCNGC	2 cut(s)	6, 270
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	240, 328
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	2 cut(s)	92, 166
Hin1II	CATG	2 cut(s)	148, 203
Hin6I	GCGC	2 cut(s)	90, 164
HinP1I	GCGC	2 cut(s)	90, 164
HinfI	GANTC	2 cut(s)	58, 275
HphI	GGTGA	1 cut(s)	330
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	215
Hpy99I	CGWCG	2 cut(s)	22, 40
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	121, 221, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 131, 218
HpyF3I	CTNAG	2 cut(s)	304, 342
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	148, 203
HspAI	GCGC	2 cut(s)	90, 164
Kzo9I	GATC	2 cut(s)	103, 226
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	7 cut(s)	26, 98, 107, 111, 237, 354, 433
Lsp1109I	GCAGC	2 cut(s)	17, 281
LweI	GCATC	2 cut(s)	199, 208
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	2 cut(s)	105, 228
MboI	GATC	2 cut(s)	103, 226
MboII	GAAGA	5 cut(s)	34, 37, 236, 272, 389
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	136, 196
MluCI	AATT	3 cut(s)	69, 452, 486
MmeI	TCCRAC	2 cut(s)	376, 395
MnlI	CCTC	9 cut(s)	4, 118, 150, 199, 227, 230, 289, 394, 411
MslI	CAYNNNNRTG	1 cut(s)	149
MvnI	CGCG	2 cut(s)	216, 232
MwoI	GCNNNNNNNGC	3 cut(s)	41, 131, 218
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	103, 226
NlaIII	CATG	2 cut(s)	148, 203
NlaIV	GGNNCC	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	34
NruI	TCGCGA	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PfeI	GAWTC	2 cut(s)	58, 275
PkrI	GCNGC	2 cut(s)	7, 271
Psp124BI	GAGCTC	2 cut(s)	136, 196
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	226
RruI	TCGCGA	1 cut(s)	216
RsaI	GTAC	3 cut(s)	77, 189, 359
RsaNI	GTAC	3 cut(s)	76, 188, 358
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	2 cut(s)	136, 196
SatI	GCNGC	2 cut(s)	6, 270
Sau3AI	GATC	2 cut(s)	103, 226
Sau96I	GGNCC	1 cut(s)	481
SduI	GDGCHC	2 cut(s)	136, 196
SetI	ASST	6 cut(s)	20, 136, 142, 196, 343, 348
SfaNI	GCATC	2 cut(s)	199, 208
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	69, 452, 486
SsiI	CCGC	4 cut(s)	44, 129, 230, 295
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	2 cut(s)	136, 196
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	20, 102
TasI	AATT	3 cut(s)	69, 452, 486
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	58, 275
TscAI	CASTG	1 cut(s)	92
TseI	GCWGC	2 cut(s)	5, 269
TspGWI	ACGGA	2 cut(s)	63, 308
TspRI	CASTG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	1 cut(s)	452
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.