Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

929054 .. 929809

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATCGAGCGAATGGGAATCTTGCCGCCGACGAGGCGTCTCAGAGCAAGGTCACTCGCCATATCTCCAAGCAAAACAAACACAAGCCAGAAGATAAATTGGGATTCTCCGAAAAGGGGTTCGGGTTTCTCAGAGAATCAGACATGGGTTCTGATGGGTTCCAATCAAAACCCTCAAAGACTGGAAATTTAAGTTCCCAAGAGCTGACTCTCAGCTACCTCTGCGACAGTACCAAACTGGGTTTTCTCGAGAAGGAGTTCGCCGGCGCAAATTTGCTGACTTCGTTGGAGAAAGAGAGTTTCAAAGGCAAAGAAGCCATGGTTTCGGAGAATTCTAACAAATGGGTAGAGAGAGATTTCCTTAATTTGAACGAAACCAGGTTGAATTGCTCAAAGAGAGAGCTTGCTGAGGAGGCGGAGAGAGAAAGCAGGGACGACAAGAAGCCAAAGCTCGAGACTTTGAATCTCTCTCTAGCCTTGCCGGAGGTATCTTTCTCTCTCACCGCCTCAAACGCCTTGCAGAATGGCGATCCTCCGGCGATGCCGCGGCCGAGCAGAAGCATACAGTCGTTGGCGCCGTCTGCTAACAACACACGGACAACTTGCTCCAATGATTTCACAGCAGCTTCATTGTCGTACTCTTACTCCCACCCATTTTCCCACAACCCCAGTTGCTCGCTTACCCGAAATTCGACGGATTTCGAGTATGCTGTTGGGAAAGATCGATCAAATTGGGAACTGTGGGGAGGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009880 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0030154 GO:0032501 GO:0032502 GO:0045165 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

252

Amino Acids

27.83

Weight (kDa)

6.02

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	574
AccII	CGCG	1 cut(s)	547
AciI	CCGC	5 cut(s)	27, 416, 504, 545, 547
AclWI	GGATC	2 cut(s)	12, 524
AcoI	YGGCCR	1 cut(s)	548
AcsI	RAATTY	4 cut(s)	187, 271, 331, 688
AcyI	GRCGYC	2 cut(s)	38, 575
AfaI	GTAC	2 cut(s)	232, 638
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	304, 370, 385, 463
AhdI	GACNNNNNGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	5 cut(s)	205, 216, 403, 451, 626
AluI	AGCT	5 cut(s)	205, 216, 403, 451, 626
Alw26I	GTCTC	2 cut(s)	45, 449
AlwI	GGATC	2 cut(s)	12, 524
Ama87I	CYCGRG	2 cut(s)	248, 452
AoxI	GGCC	1 cut(s)	548
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	4 cut(s)	187, 271, 331, 688
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	269, 577
AsuHPI	GGTGA	1 cut(s)	493
AvaI	CYCGRG	2 cut(s)	248, 452
BaeGI	GKGCMC	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	574
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	635
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	45, 449
BfaI	CTAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	578
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	4 cut(s)	27, 545, 548, 624
BlsI	GCNGC	4 cut(s)	28, 546, 549, 625
Bme1390I	CCNGG	1 cut(s)	379
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmeT110I	CYCGRG	2 cut(s)	248, 452
BmiI	GGNNCC	2 cut(s)	161, 576
BmrFI	CCNGG	1 cut(s)	379
BmrI	ACTGGG	2 cut(s)	248, 663
BmsI	GCATC	1 cut(s)	531
BmuI	ACTGGG	2 cut(s)	248, 663
Bpu10I	CCTNAGC	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	724
BsaHI	GRCGYC	2 cut(s)	38, 575
BsaJI	CCNNGG	2 cut(s)	318, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	3 cut(s)	187, 243, 669
BseBI	CCWGG	1 cut(s)	379
BseCI	ATCGAT	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	318, 545
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	4 cut(s)	56, 145, 226, 399
BseNI	ACTGG	3 cut(s)	187, 243, 669
BseRI	GAGGAG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	753
BseX3I	CGGCCG	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	635
Bsh1236I	CGCG	1 cut(s)	547
Bsh1285I	CGRYCG	1 cut(s)	551
BshFI	GGCC	1 cut(s)	550
BshNI	GGYRCC	1 cut(s)	574
BshVI	ATCGAT	1 cut(s)	724
BsiEI	CGRYCG	1 cut(s)	551
BsiHKCI	CYCGRG	2 cut(s)	248, 452
BsiSI	CCGG	3 cut(s)	264, 482, 536
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	45, 449
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	550
BsoBI	CYCGRG	2 cut(s)	248, 452
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	4 cut(s)	4, 529, 721, 725
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	5 cut(s)	27, 416, 504, 545, 547
BspANI	GGCC	1 cut(s)	550
BspCNI	CTCAG	4 cut(s)	55, 144, 225, 400
BspDI	ATCGAT	1 cut(s)	724
BspFNI	CGCG	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	161, 576
BspPI	GGATC	2 cut(s)	12, 524
BspT107I	GGYRCC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	3 cut(s)	187, 243, 669
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	318, 545
BssMI	GATC	4 cut(s)	4, 529, 721, 725
BssNI	GRCGYC	2 cut(s)	38, 575
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	3 cut(s)	230, 567, 741
BstACI	GRCGYC	2 cut(s)	38, 575
BstC8I	GCNNGC	3 cut(s)	265, 405, 677
BstDEI	CTNAG	4 cut(s)	42, 131, 212, 408
BstDSI	CCRYGG	2 cut(s)	318, 545
BstFNI	CGCG	1 cut(s)	547
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	2 cut(s)	269, 577
BstKTI	GATC	4 cut(s)	7, 532, 724, 728
BstMAI	GTCTC	2 cut(s)	45, 449
BstMBI	GATC	4 cut(s)	4, 529, 721, 725
BstMCI	CGRYCG	1 cut(s)	551
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 222, 413, 512, 581
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	377
BstSLI	GKGCMC	1 cut(s)	753
BstUI	CGCG	1 cut(s)	547
BstV1I	GCAGC	1 cut(s)	635
BstZI	CGGCCG	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	724
BsuRI	GGCC	1 cut(s)	550
BsuTUI	ATCGAT	1 cut(s)	724
BtgI	CCRYGG	2 cut(s)	318, 545
BtgZI	GCGATG	1 cut(s)	554
Cac8I	GCNNGC	3 cut(s)	265, 405, 677
CfoI	GCGC	2 cut(s)	269, 577
Cfr10I	RCCGGY	1 cut(s)	263
Cfr42I	CCGCGG	1 cut(s)	548
ClaI	ATCGAT	1 cut(s)	724
CseI	GACGC	1 cut(s)	27
CsiI	ACCWGGT	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	231, 637
CviAII	CATG	2 cut(s)	145, 319
CviQI	GTAC	2 cut(s)	231, 637
DdeI	CTNAG	4 cut(s)	42, 131, 212, 408
DinI	GGCGCC	1 cut(s)	576
DpnI	GATC	4 cut(s)	6, 531, 723, 727
DpnII	GATC	4 cut(s)	4, 529, 721, 725
DriI	GACNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	548
EagI	CGGCCG	1 cut(s)	548
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	431
EclXI	CGGCCG	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	318
Eco52I	CGGCCG	1 cut(s)	548
Eco88I	CYCGRG	2 cut(s)	248, 452
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	318
EgeI	GGCGCC	1 cut(s)	576
EheI	GGCGCC	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	2 cut(s)	148, 322
FaiI	YATR	5 cut(s)	63, 146, 320, 563, 708
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	2 cut(s)	144, 318
Fnu4HI	GCNGC	4 cut(s)	27, 545, 548, 624
Fsp4HI	GCNGC	4 cut(s)	27, 545, 548, 624
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	2 cut(s)	268, 576
GluI	GCNGC	4 cut(s)	27, 545, 548, 624
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	550
HapII	CCGG	3 cut(s)	264, 482, 536
HgaI	GACGC	1 cut(s)	27
HhaI	GCGC	2 cut(s)	269, 577
Hin1I	GRCGYC	2 cut(s)	38, 575
Hin1II	CATG	2 cut(s)	148, 322
Hin6I	GCGC	2 cut(s)	267, 575
HinP1I	GCGC	2 cut(s)	267, 575
HinfI	GANTC	5 cut(s)	19, 105, 137, 208, 463
HpaII	CCGG	3 cut(s)	264, 482, 536
HphI	GGTGA	1 cut(s)	493
Hpy188I	TCNGA	6 cut(s)	45, 112, 134, 142, 154, 328
Hpy188III	TCNNGA	3 cut(s)	248, 250, 454
Hpy99I	CGWCG	2 cut(s)	35, 697
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	3 cut(s)	230, 567, 741
HpyCH4V	TGCA	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 222, 413, 512, 581
HpyF3I	CTNAG	4 cut(s)	42, 131, 212, 408
Hsp92I	GRCGYC	2 cut(s)	38, 575
Hsp92II	CATG	2 cut(s)	148, 322
HspAI	GCGC	2 cut(s)	267, 575
KasI	GGCGCC	1 cut(s)	574
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	548
Kzo9I	GATC	4 cut(s)	4, 529, 721, 725
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	635
LweI	GCATC	1 cut(s)	531
MabI	ACCWGGT	1 cut(s)	377
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	4 cut(s)	6, 531, 723, 727
MboI	GATC	4 cut(s)	4, 529, 721, 725
MboII	GAAGA	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	8 cut(s)	98, 187, 271, 331, 364, 385, 688, 730
Mly113I	GGCGCC	1 cut(s)	575
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	9 cut(s)	28, 184, 230, 403, 406, 478, 517, 543, 740
MreI	CGCCGGCG	1 cut(s)	263
MroNI	GCCGGC	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	191, 363
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	3 cut(s)	264, 482, 536
MspR9I	CCNGG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	379
MvnI	CGCG	1 cut(s)	547
MwoI	GCNNNNNNNGC	5 cut(s)	35, 222, 413, 512, 581
NaeI	GCCGGC	1 cut(s)	265
NarI	GGCGCC	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	4 cut(s)	4, 529, 721, 725
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	2 cut(s)	148, 322
NlaIV	GGNNCC	2 cut(s)	161, 576
NmeAIII	GCCGAG	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	52
PaeR7I	CTCGAG	2 cut(s)	248, 452
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PdiI	GCCGGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	4 cut(s)	19, 105, 137, 463
PkrI	GCNGC	4 cut(s)	28, 546, 549, 625
PleI	GAGTC	1 cut(s)	202
PluTI	GGCGCC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	2 cut(s)	161, 576
RsaI	GTAC	2 cut(s)	232, 638
RsaNI	GTAC	2 cut(s)	231, 637
SacII	CCGCGG	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	191, 363
SatI	GCNGC	4 cut(s)	27, 545, 548, 624
Sau3AI	GATC	4 cut(s)	4, 529, 721, 725
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	753
SetI	ASST	9 cut(s)	54, 207, 218, 222, 383, 405, 453, 489, 628
SexAI	ACCWGGT	1 cut(s)	377
SfaNI	GCATC	1 cut(s)	531
SfoI	GGCGCC	1 cut(s)	576
Sfr274I	CTCGAG	2 cut(s)	248, 452
Sfr303I	CCGCGG	1 cut(s)	548
SgrAI	CRCCGGYG	1 cut(s)	263
SgrBI	CCGCGG	1 cut(s)	548
SlaI	CTCGAG	2 cut(s)	248, 452
SmlI	CTYRAG	2 cut(s)	248, 452
SmoI	CTYRAG	2 cut(s)	248, 452
Sse9I	AATT	8 cut(s)	98, 187, 271, 331, 364, 385, 688, 730
SsiI	CCGC	5 cut(s)	27, 416, 504, 545, 547
SspDI	GGCGCC	1 cut(s)	574
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	230, 567, 741
TaqI	TCGA	6 cut(s)	7, 249, 453, 692, 702, 724
TasI	AATT	8 cut(s)	98, 187, 271, 331, 364, 385, 688, 730
TauI	GCSGC	3 cut(s)	29, 547, 550
TfiI	GAWTC	4 cut(s)	19, 105, 137, 463
Tru1I	TTAA	2 cut(s)	191, 363
Tru9I	TTAA	2 cut(s)	191, 363
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	618
TspGWI	ACGGA	2 cut(s)	610, 710
XapI	RAATTY	4 cut(s)	187, 271, 331, 688
XhoI	CTCGAG	2 cut(s)	248, 452
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.