pycom13g01920

PLAC8 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Reverse (-)
1293744 .. 1293968
225 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGTACTCGTCACACCCAAAGGGATACGAGAAGTACTCCTCGTCCGACCACCAGCACCAGCACCAGCACAATCACCACCAAGATGCTCCGCCGACAGGTATCCCGGTCAGCTCCAGCACTGAACCATATTTTACTACTTCTAACGAAGAAATGAGCTTCCACAGTGGCCACTCCCACATGACCCACCCCCCTCCCCATCCCCGCCCTCGTGCTCTCGTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.42

Weight (kDa)

6.61

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 89, 202
AcoI YGGCCR 1 cut(s) 166
AfaI GTAC 2 cut(s) 5, 35
AfiI CCNNNNNNNGG 1 cut(s) 95
AluBI AGCT 2 cut(s) 111, 156
AluI AGCT 2 cut(s) 111, 156
Alw21I GWGCWC 1 cut(s) 214
AoxI GGCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 65
BalI TGGCCA 1 cut(s) 168
BauI CACGAG 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 214
BccI CCATC 1 cut(s) 204
BciVI GTATCC 2 cut(s) 17, 110
BcnI CCSGG 1 cut(s) 104
BfuI GTATCC 2 cut(s) 17, 110
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 73
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 28
BshFI GGCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 214
BspACI CCGC 2 cut(s) 89, 202
BspANI GGCC 1 cut(s) 168
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 164
BstF5I GGATG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 102
BsuI GTATCC 2 cut(s) 17, 110
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 117, 169
Csp6I GTAC 2 cut(s) 4, 34
CviAII CATG 1 cut(s) 178
CviJI RGCY 3 cut(s) 111, 156, 168
CviKI_1 RGCY 3 cut(s) 111, 156, 168
CviQI GTAC 2 cut(s) 4, 34
EaeI YGGCCR 1 cut(s) 166
EciI GGCGGA 1 cut(s) 78
FaeI CATG 1 cut(s) 181
FaiI YATR 2 cut(s) 127, 179
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 177
FauI CCCGC 1 cut(s) 209
FokI GGATG 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 181
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 164
Hsp92II CATG 1 cut(s) 181
LmnI GCTCC 2 cut(s) 91, 116
LpnPI CCDG 6 cut(s) 65, 71, 77, 81, 117, 127
LweI GCATC 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 9
MboII GAAGA 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 3 cut(s) 49, 201, 216
Mox20I TGGCCA 1 cut(s) 168
MscI TGGCCA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 168
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 104
NciI CCSGG 1 cut(s) 104
NlaIII CATG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 9
RsaI GTAC 2 cut(s) 5, 35
RsaNI GTAC 2 cut(s) 4, 34
RseI CAYNNNNRTG 1 cut(s) 81
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 214
SetI ASST 3 cut(s) 100, 113, 158
SfaNI GCATC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 81
SsiI CCGC 2 cut(s) 89, 202
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 164
TatI WGTACW 2 cut(s) 3, 33
TscAI CASTG 2 cut(s) 124, 169
TseFI GTSAC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 9
TspRI CASTG 2 cut(s) 124, 169
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.