Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1330262 .. 1332064

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGCCCCCAGAGTTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAACATCGATCCTCGGTAAAAGGTTTTTTGTTACCCCTTCGGATTCTGTAGCCATCATTGCTGCAAATGCAGTTGAAGCCATACCTTACTTCAAAACTGGTCTGAAGGGAGTTGCCAGGAGCATGCCTACCTCTGCTGCCCTTGATGTTGTAGCCAAACATCTAAATTTAAAATTCTTTGAGGTACCCACTGGCTGGAAATTTTTTGGTAATTTAATGGATGCTGGATTATGTTCAGTTTGTGGTGAAGAAAGTTTTGGAACAGGTTCCGATCATATCCGTGAGAAAGATGGTATCTGGGCAGTTTTAGCTTGGTTATCCATACTTGCTTATAAAAATAAGGAAAATCTTGGTGGGGAGAAGCTTGTAAGTGTTGAGGACATAGTTCGTAAGCATTGGGCTACCTTTGGTCGCCATTATTATACTCGATACGACTATGAGAATGTAGATGCAGGTAAAGCAAAGGAACTCATGGCTTCTTTGGTGAAATTGCAGTCTGACCTTTCTGAAGTCAACAAGATTGTGAAGGGAATACGTTCTGATGTCTCTAATGTTGTCAACGCTGATGAATTTGAGTACAAGGATCCTGTTGATGGTTCCATCTCAAAACACCAGGGCATCCGGTACTTGTTTGAGGACGGATCACGATTGGTTTTCCGCCTCTCAGGAACCGGCTCAGAAGGTGCCACAATCCGACTCTACATTGAGCAATATGAGAAGGATCCATCGAAAATTGGCAGAGAATCTTCAGAAGCGCTTGGTCCCCTCGTGGAGGTTGCTCTTAAGCTTTCGAAGATGCAAGAGTTCACCGGACGATCTGTCCCTACTGTTATCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0004614 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005982 GO:0005996 GO:0006006 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009581 GO:0009582 GO:0009590 GO:0009605 GO:0009628 GO:0009629 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015980 GO:0016020 GO:0016051 GO:0016052 GO:0016853 GO:0016866 GO:0016868 GO:0019252 GO:0019318 GO:0019320 GO:0019388 GO:0031967 GO:0031975 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046365 GO:0046686 GO:0050896 GO:0051606 GO:0055114 GO:0071704 GO:0071944 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00052 ko00230 ko00500 ko00520 ko00521 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00052 map00230 map00500 map00520 map00521 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_II PGM_PMM_III PGM_PMM_IV

Protein Analysis

295

Amino Acids

32.47

Weight (kDa)

6.55

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGM_PMM_III	PF02880	29 - 129	5.4e-22	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
PGM1_C_vert_fung	PF24947	153 - 291	4.2e-51	Phosphoglucomutase-1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	488
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	2 cut(s)	229, 728
AccB7I	CCANNNNNTGG	2 cut(s)	16, 240
AciI	CCGC	1 cut(s)	703
AclWI	GGATC	6 cut(s)	49, 623, 636, 694, 761, 774
AcsI	RAATTY	4 cut(s)	211, 218, 245, 614
AcuI	CTGAAG	3 cut(s)	170, 573, 777
AfaI	GTAC	3 cut(s)	231, 623, 671
AfeI	AGCGCT	1 cut(s)	801
AfiI	CCNNNNNNNGG	4 cut(s)	16, 240, 638, 817
AflII	CTTAAG	1 cut(s)	827
AgsI	TTSAA	2 cut(s)	122, 139
AhdI	GACNNNNNGTC	1 cut(s)	863
AjnI	CCWGG	2 cut(s)	161, 657
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	3 cut(s)	356, 409, 832
AluI	AGCT	3 cut(s)	356, 409, 832
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	6 cut(s)	49, 623, 636, 694, 761, 774
Aor51HI	AGCGCT	1 cut(s)	801
ApeKI	GCWGC	4 cut(s)	22, 25, 107, 182
ApoI	RAATTY	4 cut(s)	211, 218, 245, 614
Asp700I	GAANNNNTTC	2 cut(s)	310, 580
Asp718I	GGTACC	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	1 cut(s)	806
AsuHPI	GGTGA	4 cut(s)	46, 302, 541, 844
AsuII	TTCGAA	1 cut(s)	836
AvaII	GGWCC	1 cut(s)	806
BamHI	GGATCC	2 cut(s)	628, 766
BanI	GGYRCC	2 cut(s)	229, 728
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	812
BbvI	GCAGC	4 cut(s)	9, 12, 94, 169
BccI	CCATC	6 cut(s)	25, 107, 329, 632, 653, 778
BciT130I	CCWGG	2 cut(s)	163, 659
BcoDI	GTCTC	1 cut(s)	595
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	803
BfrI	CTTAAG	1 cut(s)	827
BfuAI	ACCTGC	1 cut(s)	488
BisI	GCNGC	4 cut(s)	23, 26, 108, 183
BlsI	GCNGC	4 cut(s)	24, 27, 109, 184
Bme1390I	CCNGG	2 cut(s)	163, 659
Bme18I	GGWCC	1 cut(s)	806
BmeRI	GACNNNNNGTC	1 cut(s)	863
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	8 cut(s)	231, 313, 630, 643, 715, 730, 768, 808
BmrFI	CCNGG	2 cut(s)	163, 659
BmsI	GCATC	5 cut(s)	27, 256, 484, 672, 831
Bpu14I	TTCGAA	1 cut(s)	836
Bsa29I	ATCGAT	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	58, 658
BsaWI	WCCGGW	2 cut(s)	666, 854
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 240, 638, 817
Bse118I	RCCGGY	1 cut(s)	716
Bse1I	ACTGG	2 cut(s)	148, 241
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	163, 659
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	58, 658
BseGI	GGATG	2 cut(s)	271, 663
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	4 cut(s)	16, 240, 638, 817
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	723, 735
BseNI	ACTGG	2 cut(s)	148, 241
BseXI	GCAGC	4 cut(s)	9, 12, 94, 169
BshNI	GGYRCC	2 cut(s)	229, 728
BshVI	ATCGAT	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	667, 717, 855
BslFI	GGGAC	2 cut(s)	792, 851
BslI	CCNNNNNNNGG	4 cut(s)	16, 240, 638, 817
BsmAI	GTCTC	1 cut(s)	595
BsmFI	GGGAC	2 cut(s)	792, 851
Bsp119I	TTCGAA	1 cut(s)	836
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	7 cut(s)	42, 54, 316, 628, 686, 766, 860
BspACI	CCGC	1 cut(s)	703
BspCNI	CTCAG	2 cut(s)	722, 734
BspDI	ATCGAT	1 cut(s)	53
BspLI	GGNNCC	8 cut(s)	231, 313, 630, 643, 715, 730, 768, 808
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	6 cut(s)	49, 623, 636, 694, 761, 774
BspT104I	TTCGAA	1 cut(s)	836
BspT107I	GGYRCC	2 cut(s)	229, 728
BspTI	CTTAAG	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	716
BsrI	ACTGG	2 cut(s)	148, 241
BssAI	RCCGGY	1 cut(s)	716
BssECI	CCNNGG	2 cut(s)	58, 658
BssMI	GATC	7 cut(s)	42, 54, 316, 628, 686, 766, 860
BssSI	CACGAG	1 cut(s)	812
Bst2BI	CACGAG	1 cut(s)	812
Bst2UI	CCWGG	2 cut(s)	163, 659
Bst4CI	ACNGT	1 cut(s)	874
BstAFI	CTTAAG	1 cut(s)	827
BstBI	TTCGAA	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	709, 721
BstENI	CCTNNNNNAGG	1 cut(s)	815
BstF5I	GGATG	2 cut(s)	271, 663
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	7 cut(s)	45, 57, 319, 631, 689, 769, 863
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	7 cut(s)	42, 54, 316, 628, 686, 766, 860
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 113, 122, 353, 503
BstNI	CCWGG	2 cut(s)	163, 659
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	161, 657
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	9, 12, 94, 169
BstX2I	RGATCY	2 cut(s)	628, 766
BstYI	RGATCY	2 cut(s)	628, 766
Bsu15I	ATCGAT	1 cut(s)	53
BsuTUI	ATCGAT	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	271, 663
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	1 cut(s)	170
CfoI	GCGC	1 cut(s)	802
Cfr10I	RCCGGY	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	806
ClaI	ATCGAT	1 cut(s)	53
Csp6I	GTAC	3 cut(s)	230, 622, 670
CviAII	CATG	2 cut(s)	169, 517
CviQI	GTAC	3 cut(s)	230, 622, 670
DdeI	CTNAG	2 cut(s)	709, 721
DpnI	GATC	7 cut(s)	44, 56, 318, 630, 688, 768, 862
DpnII	GATC	7 cut(s)	42, 54, 316, 628, 686, 766, 860
DraI	TTTAAA	1 cut(s)	216
DriI	GACNNNNNGTC	1 cut(s)	863
Eam1105I	GACNNNNNGTC	1 cut(s)	863
EciI	GGCGGA	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	806
Eco47III	AGCGCT	1 cut(s)	801
Eco57I	CTGAAG	3 cut(s)	170, 573, 777
EcoNI	CCTNNNNNAGG	1 cut(s)	815
EcoRII	CCWGG	2 cut(s)	161, 657
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	172, 520
FaqI	GGGAC	2 cut(s)	792, 851
FatI	CATG	2 cut(s)	168, 516
Fnu4HI	GCNGC	4 cut(s)	23, 26, 108, 183
FokI	GGATG	2 cut(s)	278, 650
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	23, 26, 108, 183
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	4 cut(s)	23, 26, 108, 183
HaeII	RGCGCY	1 cut(s)	803
HapII	CCGG	3 cut(s)	667, 717, 855
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	2 cut(s)	172, 520
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	2 cut(s)	559, 604
HindII	GTYRAC	2 cut(s)	559, 604
HindIII	AAGCTT	2 cut(s)	407, 830
HinfI	GANTC	3 cut(s)	89, 741, 788
HpaII	CCGG	3 cut(s)	667, 717, 855
HphI	GGTGA	4 cut(s)	46, 302, 541, 844
Hpy166II	GTNNAC	3 cut(s)	559, 604, 852
Hpy188I	TCNGA	9 cut(s)	88, 150, 316, 544, 553, 586, 724, 740, 796
Hpy188III	TCNNGA	2 cut(s)	690, 711
Hpy8I	GTNNAC	3 cut(s)	559, 604, 852
HpyAV	CCTTC	5 cut(s)	93, 145, 565, 719, 757
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	6 cut(s)	40, 110, 116, 497, 538, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 113, 122, 353, 503
HpyF3I	CTNAG	2 cut(s)	709, 721
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	2 cut(s)	172, 520
HspAI	GCGC	1 cut(s)	800
KpnI	GGTACC	1 cut(s)	233
Kzo9I	GATC	7 cut(s)	42, 54, 316, 628, 686, 766, 860
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	4 cut(s)	9, 12, 94, 169
LweI	GCATC	5 cut(s)	27, 256, 484, 672, 831
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	2 cut(s)	46, 76
MalI	GATC	7 cut(s)	44, 56, 318, 630, 688, 768, 862
MboI	GATC	7 cut(s)	42, 54, 316, 628, 686, 766, 860
MboII	GAAGA	3 cut(s)	305, 783, 850
MflI	RGATCY	2 cut(s)	628, 766
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	7 cut(s)	211, 218, 245, 256, 533, 614, 777
MlyI	GAGTC	1 cut(s)	735
MmeI	TCCRAC	1 cut(s)	763
MnlI	CCTC	8 cut(s)	68, 187, 220, 415, 673, 716, 811, 821
MroXI	GAANNNNTTC	2 cut(s)	310, 580
MseI	TTAA	3 cut(s)	215, 260, 828
MslI	CAYNNNNRTG	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	3 cut(s)	667, 717, 855
MspR9I	CCNGG	2 cut(s)	163, 659
MvaI	CCWGG	2 cut(s)	163, 659
MwoI	GCNNNNNNNGC	5 cut(s)	104, 113, 122, 353, 503
NdeII	GATC	7 cut(s)	42, 54, 316, 628, 686, 766, 860
NlaIII	CATG	2 cut(s)	172, 520
NlaIV	GGNNCC	8 cut(s)	231, 313, 630, 643, 715, 730, 768, 808
NspI	RCATGY	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	836
PaeI	GCATGC	1 cut(s)	172
PdmI	GAANNNNTTC	2 cut(s)	310, 580
PfeI	GAWTC	2 cut(s)	89, 788
PflMI	CCANNNNNTGG	2 cut(s)	16, 240
PkrI	GCNGC	4 cut(s)	24, 27, 109, 184
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PsiI	TTATAA	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	161, 657
PspGI	CCWGG	2 cut(s)	161, 657
PspN4I	GGNNCC	8 cut(s)	231, 313, 630, 643, 715, 730, 768, 808
PspPI	GGNCC	1 cut(s)	806
PsuI	RGATCY	2 cut(s)	628, 766
RsaI	GTAC	3 cut(s)	231, 623, 671
RsaNI	GTAC	3 cut(s)	230, 622, 670
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	215, 260, 828
SatI	GCNGC	4 cut(s)	23, 26, 108, 183
Sau3AI	GATC	7 cut(s)	42, 54, 316, 628, 686, 766, 860
Sau96I	GGNCC	1 cut(s)	806
SchI	GAGTC	1 cut(s)	735
ScrFI	CCNGG	2 cut(s)	163, 659
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	5 cut(s)	27, 256, 484, 672, 831
SfcI	CTRYAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	836
SinI	GGWCC	1 cut(s)	806
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	7 cut(s)	211, 218, 245, 256, 533, 614, 777
SsiI	CCGC	1 cut(s)	703
StyD4I	CCNGG	2 cut(s)	161, 657
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	4 cut(s)	53, 472, 773, 836
TasI	AATT	7 cut(s)	211, 218, 245, 256, 533, 614, 777
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	2 cut(s)	89, 788
Tru1I	TTAA	3 cut(s)	215, 260, 828
Tru9I	TTAA	3 cut(s)	215, 260, 828
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	4 cut(s)	22, 25, 107, 182
TspDTI	ATGAA	1 cut(s)	627
TspGWI	ACGGA	2 cut(s)	314, 699
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	2 cut(s)	16, 240
Vha464I	CTTAAG	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	806
XagI	CCTNNNNNAGG	1 cut(s)	815
XapI	RAATTY	4 cut(s)	211, 218, 245, 614
XceI	RCATGY	1 cut(s)	172
XmnI	GAANNNNTTC	2 cut(s)	310, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.