Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1561001 .. 1561810

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAAGCATTGGACTGTTTACATCAATAAACAAAGGCCCAAACTCCACTATCAGACCCACGCCCACAGCCCACACCTCCCAACGCCTAAAACCCCCAAAACCCTAAGACCTAGAACTTTCCATCATCTCCTAGAACTTGATCAACAAGCAGTACCCCTCCTCCCCAAACCCTCACATTGTAAACCATCAGCAGTCGTCCTCTTCCCCCAAACCCTAAACCCAGTAGCTCCAGTGTTCTCAGAGACCCAAATGGCGAGGCGTTTGATCCCAACTCTCAACCGCGTCCTGATCGAGAAAATCATCCCGCCCTCCAAAACCACCGCCGGCATTCTCCTCCCCGAGTCCTCCACCAAGCTAAACTCAGGGAAGGTGGTTGCTGTGGGACCAGGAGCCAAGGACAAGGCCGGGAATCTGATTCCGGTGGCCGTGAAAGAAGGTGATACCGTTCTCTTGCCCGAGTATGGAGGCACCGAAGTGAAGCTTGGTGACAAAGAGTTCCATTTATACAGGGACGAGGACATCTTGGGCACTCTCCACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010033 GO:0031974 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

181

Amino Acids

19.97

Weight (kDa)

9.55

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	88 - 177	3.3e-24	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	467
AccII	CGCG	1 cut(s)	282
AciI	CCGC	3 cut(s)	280, 305, 321
AclWI	GGATC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	423
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	461
AjnI	CCWGG	1 cut(s)	385
AjuI	GAANNNNNNNTTGG	2 cut(s)	465, 497
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	3 cut(s)	227, 355, 481
AluI	AGCT	3 cut(s)	227, 355, 481
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	259
Ama87I	CYCGRG	2 cut(s)	338, 455
AoxI	GGCC	3 cut(s)	35, 402, 423
AspS9I	GGNCC	2 cut(s)	36, 383
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	449, 497
AvaI	CYCGRG	2 cut(s)	338, 455
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	467
BccI	CCATC	2 cut(s)	129, 193
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	387
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	111, 131
Bme1390I	CCNGG	2 cut(s)	387, 406
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	2 cut(s)	338, 455
BmgT120I	GGNCC	2 cut(s)	36, 383
BmiI	GGNNCC	3 cut(s)	384, 391, 469
BmrFI	CCNGG	2 cut(s)	387, 406
BmrI	ACTGGG	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	221, 230
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	2 cut(s)	252, 375
BseNI	ACTGG	2 cut(s)	221, 230
BseRI	GAGGAG	2 cut(s)	149, 323
BseSI	GKGCMC	1 cut(s)	530
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	37, 404, 425
BshNI	GGYRCC	1 cut(s)	467
BsiHKCI	CYCGRG	2 cut(s)	338, 455
BsiSI	CCGG	3 cut(s)	324, 405, 419
BslFI	GGGAC	2 cut(s)	396, 524
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	396, 524
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	3 cut(s)	37, 404, 425
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	2 cut(s)	338, 455
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	3 cut(s)	139, 264, 288
BspACI	CCGC	3 cut(s)	280, 305, 321
BspANI	GGCC	3 cut(s)	37, 404, 425
BspCNI	CTCAG	2 cut(s)	251, 374
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	384, 391, 469
BspPI	GGATC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	221, 230
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	3 cut(s)	139, 264, 288
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	16, 445
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	104, 238, 361
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	142, 267, 291
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	3 cut(s)	139, 264, 288
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	385, 404
BstSLI	GKGCMC	1 cut(s)	530
BstUI	CGCG	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	37, 404, 425
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	2 cut(s)	36, 383
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	152
CviJI	RGCY	8 cut(s)	37, 69, 227, 355, 392, 404, 425, 481
CviKI_1	RGCY	8 cut(s)	37, 69, 227, 355, 392, 404, 425, 481
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	3 cut(s)	104, 238, 361
DpnI	GATC	3 cut(s)	141, 266, 290
DpnII	GATC	3 cut(s)	139, 264, 288
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	383
Eco88I	CYCGRG	2 cut(s)	338, 455
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaiI	YATR	2 cut(s)	462, 505
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	2 cut(s)	396, 524
FauI	CCCGC	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	139
FokI	GGATG	1 cut(s)	287
FspBI	CTAG	2 cut(s)	111, 131
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	37, 404, 425
HapII	CCGG	3 cut(s)	324, 405, 419
HgaI	GACGC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	341, 409, 415
HpaII	CCGG	3 cut(s)	324, 405, 419
HphI	GGTGA	2 cut(s)	449, 497
Hpy166II	GTNNAC	2 cut(s)	19, 182
Hpy188I	TCNGA	3 cut(s)	54, 241, 414
Hpy188III	TCNNGA	2 cut(s)	286, 292
Hpy8I	GTNNAC	2 cut(s)	19, 182
HpyAV	CCTTC	2 cut(s)	361, 428
HpyCH4III	ACNGT	2 cut(s)	16, 445
HpyF3I	CTNAG	3 cut(s)	104, 238, 361
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	139, 264, 288
LmnI	GCTCC	2 cut(s)	232, 389
MaeI	CTAG	2 cut(s)	111, 131
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	3 cut(s)	141, 266, 290
MboI	GATC	3 cut(s)	139, 264, 288
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	3 cut(s)	324, 405, 419
MspR9I	CCNGG	2 cut(s)	387, 406
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	387
MvnI	CGCG	1 cut(s)	282
NaeI	GCCGGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	3 cut(s)	139, 264, 288
NgoMIV	GCCGGC	1 cut(s)	323
NlaIV	GGNNCC	3 cut(s)	384, 391, 469
NmuCI	GTSAC	1 cut(s)	485
OliI	CACNNNNGTG	1 cut(s)	473
PctI	GAATGC	1 cut(s)	327
PdiI	GCCGGC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	409, 415
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	3 cut(s)	384, 391, 469
PspPI	GGNCC	2 cut(s)	36, 383
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	473
Sau3AI	GATC	3 cut(s)	139, 264, 288
Sau96I	GGNCC	2 cut(s)	36, 383
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	387, 406
SduI	GDGCHC	1 cut(s)	530
SetI	ASST	7 cut(s)	78, 112, 229, 357, 372, 439, 483
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	473
SsiI	CCGC	3 cut(s)	280, 305, 321
SspMI	CTAG	2 cut(s)	111, 131
StyD4I	CCNGG	2 cut(s)	385, 404
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	16, 445
TaqI	TCGA	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	409, 415
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	383
XspI	CTAG	2 cut(s)	111, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.