Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1577849 .. 1581263

Gene Structure 3415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGATCGAGGATTGCTTCTTGCTGTGCAAGCAATACAGGCATTGTTGGAGAATAAGGGGTTTCCAGTTATAGTTGGAATTGGAGGTCCAAGTGGTTCTGGAAAAACTAGTTTGGCTCATAAATTGGCAAACATAGTAGGATGTGAAGTTGTTTCGCTTGAAAGCTATTATAAATCTGAACAAGTTAAGGATTTCAAGTATGATGACTTCAGCTCACTCGATATGTCTTTGCTTTCAAAAAACATTGATGATATAAGGAATGGTCAAAGGACAAAAGTACCTGTATTTGATTTGGAAACTGGTGCTCGGAGTGGCTCTAAGGAACTTGAAGTTTCTGAAGACTGTGGAGTGATTATTTTTGAAGGAGTTTATGCTTTGCATCCAGATATCCGAAAATCACTTGACTTTTGGATTGCTGTTGTTGGAGGTGTTCATTCACACCTCATTTCTAGAGTTCAAAGGGATAAAAGTAGAGTGGGGTGTTTTATGTCCCAGAAAGAGATCATGATGACGGTGTTTCCAATGTTCCAGCAGTTCATTGAACCCCATCTTGTTCATGCACACCTCAAAATTCGTAATGACTTTGATCCAGTGCTTTCCCCTGAGAGCTCATTGTTTGTATTGAAGAGTAACAAGCAAGTGGCATACCAAGATATTTTAAAGATACTGGATCCTTCAAAGTTCTGCAGCTCCGTGCAGAATTTCATTGATATGTACTTAAAGCTTCCTGGACTTCCCACTAATGGGCAGTTAACAGAGGGTGACTGCATTAGGGTCAGAATATGTGAGGGCAGATTTGCATTGCTGATACGGGAGCCTATAAGAGAAGGAAACTTCATCATCCAACCTAAAGTGGATTTTGATATTAGCATTAGCACAGTTGCGGGGCTTCTTAACCTTGGGTATCAAGCCGTAGCTTATATTGAAGCATCTGCATCTATCTACCAAGATGGAAAGATTTTGGTTGAGGTCGATCATCTACAAGATGCCCCAAACCCGTACTTGCAAATCAAGGGGGTTGATAAAGATGCTGTAGCAGCTGCAGCGTCAATGCTTAAACTGGATGATTCATATACTACGAAGAGCTATCTTCAAATAGTTCTGGAAAGATTGCCAGCATTGGGAAGAGGCTCAGGTGGAATTCACACTCAGCAAGCCGCAAGGTTGCAGGAACTTGTGGAATTGATTCAATCTCAGGGCAGCAGTTCAGCTTCTGAATCCTCACCAATCAGGGAAGTTTCTCCGGTTGAAGGAGTTATCGAAGACATGCAGTCAAGGATTAGAAGACTTGAGCGGTGGCATACAATCAATACGGTACTGTGGACATTTTTAATGTCTGCGCTCGTTGGTTACACACTCTACGAAAGGAAGCGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Cytidylate_kin PRK

Protein Analysis

460

Amino Acids

51.08

Weight (kDa)

5.98

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	24 - 191	5.5e-18	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	1294
AciI	CCGC	3 cut(s)	884, 1158, 1294
AclWI	GGATC	4 cut(s)	12, 581, 665, 678
AcsI	RAATTY	3 cut(s)	570, 700, 1140
AcuI	CTGAAG	2 cut(s)	193, 357
AfaI	GTAC	4 cut(s)	279, 716, 1001, 1317
AfiI	CCNNNNNNNGG	4 cut(s)	743, 744, 1121, 1250
AhdI	GACNNNNNGTC	1 cut(s)	1270
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	727
AluBI	AGCT	9 cut(s)	165, 213, 609, 690, 724, 917, 1040, 1086, 1211
AluI	AGCT	9 cut(s)	165, 213, 609, 690, 724, 917, 1040, 1086, 1211
Alw21I	GWGCWC	2 cut(s)	307, 611
AlwI	GGATC	4 cut(s)	12, 581, 665, 678
AlwNI	CAGNNNCTG	1 cut(s)	1214
ApeKI	GCWGC	5 cut(s)	687, 1037, 1040, 1043, 1200
ApoI	RAATTY	3 cut(s)	570, 700, 1140
Asp700I	GAANNNNTTC	1 cut(s)	1185
AspLEI	GCGC	1 cut(s)	1342
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	773, 1215
AvaII	GGWCC	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BamHI	GGATCC	1 cut(s)	670
BanII	GRGCYC	1 cut(s)	611
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbsI	GAAGAC	3 cut(s)	345, 1269, 1291
Bbv12I	GWGCWC	2 cut(s)	307, 611
BbvI	GCAGC	5 cut(s)	699, 1027, 1049, 1055, 1212
BccI	CCATC	2 cut(s)	555, 944
BceAI	ACGGC	1 cut(s)	896
BciT130I	CCWGG	1 cut(s)	729
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	2 cut(s)	108, 450
BfmI	CTRYAG	3 cut(s)	685, 1032, 1041
BisI	GCNGC	6 cut(s)	688, 1038, 1041, 1044, 1158, 1201
BlsI	GCNGC	6 cut(s)	689, 1039, 1042, 1045, 1159, 1202
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	1 cut(s)	86
BmeRI	GACNNNNNGTC	1 cut(s)	1270
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	672, 816
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	5 cut(s)	388, 938, 944, 976, 1018
BpiI	GAAGAC	3 cut(s)	345, 1269, 1291
Bpu10I	CCTNAGC	1 cut(s)	1132
BpuEI	CTTGAG	1 cut(s)	1310
BsaJI	CCNNGG	1 cut(s)	898
BsaWI	WCCGGW	1 cut(s)	1243
Bsc4I	CCNNNNNNNGG	4 cut(s)	743, 744, 1121, 1250
Bse1I	ACTGG	5 cut(s)	65, 304, 590, 672, 1065
Bse3DI	GCAATG	1 cut(s)	800
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	898
BseGI	GGATG	4 cut(s)	146, 379, 840, 1069
BseLI	CCNNNNNNNGG	4 cut(s)	743, 744, 1121, 1250
BseMI	GCAATG	1 cut(s)	800
BseMII	CTCAG	4 cut(s)	594, 1146, 1163, 1208
BseNI	ACTGG	5 cut(s)	65, 304, 590, 672, 1065
BseXI	GCAGC	5 cut(s)	699, 1027, 1049, 1055, 1212
BsgI	GTGCAG	1 cut(s)	716
BsiHKAI	GWGCWC	2 cut(s)	307, 611
BsiSI	CCGG	1 cut(s)	1244
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	4 cut(s)	743, 744, 1121, 1250
BsmFI	GGGAC	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	307, 611
Bsp143I	GATC	5 cut(s)	4, 501, 586, 670, 973
BspACI	CCGC	3 cut(s)	884, 1158, 1294
BspCNI	CTCAG	4 cut(s)	595, 1145, 1162, 1207
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	672, 816
BspMAI	CTGCAG	2 cut(s)	689, 1045
BspPI	GGATC	4 cut(s)	12, 581, 665, 678
BspQI	GCTCTTC	1 cut(s)	1076
BsrBI	CCGCTC	1 cut(s)	1294
BsrDI	GCAATG	1 cut(s)	800
BsrI	ACTGG	5 cut(s)	65, 304, 590, 672, 1065
BssECI	CCNNGG	1 cut(s)	898
BssMI	GATC	5 cut(s)	4, 501, 586, 670, 973
BssT1I	CCWWGG	1 cut(s)	898
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	5 cut(s)	344, 514, 880, 1315, 1320
Bst6I	CTCTTC	3 cut(s)	620, 1076, 1120
BstC8I	GCNNGC	3 cut(s)	30, 1116, 1155
BstDEI	CTNAG	5 cut(s)	318, 603, 1132, 1149, 1194
BstF5I	GGATG	4 cut(s)	146, 379, 840, 1069
BstHHI	GCGC	1 cut(s)	1342
BstKTI	GATC	5 cut(s)	7, 504, 589, 673, 976
BstMBI	GATC	5 cut(s)	4, 501, 586, 670, 973
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 1037, 1043
BstNI	CCWGG	1 cut(s)	729
BstNSI	RCATGY	1 cut(s)	1270
BstSCI	CCNGG	1 cut(s)	727
BstSFI	CTRYAG	3 cut(s)	685, 1032, 1041
BstV1I	GCAGC	5 cut(s)	699, 1027, 1049, 1055, 1212
BstV2I	GAAGAC	3 cut(s)	345, 1269, 1291
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BtsCI	GGATG	4 cut(s)	146, 379, 840, 1069
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	3 cut(s)	30, 1116, 1155
CaiI	CAGNNNCTG	1 cut(s)	1214
CciI	TCATGA	1 cut(s)	504
CfoI	GCGC	1 cut(s)	1342
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	2 cut(s)	1035, 1361
Csp6I	GTAC	4 cut(s)	278, 715, 1000, 1316
CviAII	CATG	3 cut(s)	505, 557, 1267
CviQI	GTAC	4 cut(s)	278, 715, 1000, 1316
DdeI	CTNAG	5 cut(s)	318, 603, 1132, 1149, 1194
DpnI	GATC	5 cut(s)	6, 503, 588, 672, 975
DpnII	GATC	5 cut(s)	4, 501, 586, 670, 973
DraI	TTTAAA	1 cut(s)	660
DriI	GACNNNNNGTC	1 cut(s)	1270
Eam1104I	CTCTTC	3 cut(s)	620, 1076, 1120
Eam1105I	GACNNNNNGTC	1 cut(s)	1270
EarI	CTCTTC	3 cut(s)	620, 1076, 1120
Ecl136II	GAGCTC	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	898
Eco24I	GRGCYC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	193, 357
EcoICRI	GAGCTC	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	1140
EcoRII	CCWGG	1 cut(s)	727
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	898
FaeI	CATG	3 cut(s)	508, 560, 1270
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	3 cut(s)	504, 556, 1266
FauI	CCCGC	1 cut(s)	877
Fnu4HI	GCNGC	6 cut(s)	688, 1038, 1041, 1044, 1158, 1201
FokI	GGATG	4 cut(s)	153, 366, 827, 1076
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	6 cut(s)	688, 1038, 1041, 1044, 1158, 1201
FspBI	CTAG	2 cut(s)	108, 450
GlaI	GCGC	1 cut(s)	1341
GluI	GCNGC	6 cut(s)	688, 1038, 1041, 1044, 1158, 1201
HapII	CCGG	1 cut(s)	1244
HgaI	GACGC	2 cut(s)	1035, 1361
HhaI	GCGC	1 cut(s)	1342
Hin1II	CATG	3 cut(s)	508, 560, 1270
Hin6I	GCGC	1 cut(s)	1340
HinP1I	GCGC	1 cut(s)	1340
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	3 cut(s)	1067, 1186, 1217
HpaI	GTTAAC	1 cut(s)	753
HpaII	CCGG	1 cut(s)	1244
HphI	GGTGA	2 cut(s)	773, 1215
Hpy166II	GTNNAC	2 cut(s)	753, 1323
Hpy188I	TCNGA	6 cut(s)	178, 309, 337, 392, 779, 1216
Hpy188III	TCNNGA	5 cut(s)	99, 383, 450, 505, 1103
Hpy8I	GTNNAC	2 cut(s)	753, 1323
HpyAV	CCTTC	4 cut(s)	356, 684, 821, 1244
HpyCH4III	ACNGT	5 cut(s)	344, 514, 880, 1315, 1320
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 1037, 1043
HpyF3I	CTNAG	5 cut(s)	318, 603, 1132, 1149, 1194
Hsp92II	CATG	3 cut(s)	508, 560, 1270
HspAI	GCGC	1 cut(s)	1340
KspAI	GTTAAC	1 cut(s)	753
Kzo9I	GATC	5 cut(s)	4, 501, 586, 670, 973
LguI	GCTCTTC	1 cut(s)	1076
LmnI	GCTCC	2 cut(s)	695, 814
Lsp1109I	GCAGC	5 cut(s)	699, 1027, 1049, 1055, 1212
LweI	GCATC	5 cut(s)	388, 938, 944, 976, 1018
MaeI	CTAG	2 cut(s)	108, 450
MaeIII	GTNAC	3 cut(s)	629, 761, 1349
MalI	GATC	5 cut(s)	6, 503, 588, 672, 975
MbiI	CCGCTC	1 cut(s)	1294
MboI	GATC	5 cut(s)	4, 501, 586, 670, 973
MboII	GAAGA	7 cut(s)	350, 637, 1082, 1093, 1137, 1274, 1296
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	2 cut(s)	307, 611
MluCI	AATT	6 cut(s)	78, 122, 570, 700, 1140, 1181
MmeI	TCCRAC	4 cut(s)	27, 55, 403, 868
MnlI	CCTC	9 cut(s)	77, 419, 452, 575, 751, 781, 961, 1121, 1231
MroXI	GAANNNNTTC	1 cut(s)	1185
MseI	TTAA	7 cut(s)	186, 659, 719, 752, 894, 1056, 1331
MslI	CAYNNNNRTG	1 cut(s)	710
MspA1I	CMGCKG	1 cut(s)	1040
MspI	CCGG	1 cut(s)	1244
MspR9I	CCNGG	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 1037, 1043
NdeII	GATC	5 cut(s)	4, 501, 586, 670, 973
NlaIII	CATG	3 cut(s)	508, 560, 1270
NlaIV	GGNNCC	2 cut(s)	672, 816
NmuCI	GTSAC	1 cut(s)	761
NspI	RCATGY	1 cut(s)	1270
PagI	TCATGA	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	1076
PdmI	GAANNNNTTC	1 cut(s)	1185
PfeI	GAWTC	3 cut(s)	1067, 1186, 1217
PfoI	TCCNGGA	1 cut(s)	727
PkrI	GCNGC	6 cut(s)	689, 1039, 1042, 1045, 1159, 1202
PsiI	TTATAA	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	611
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	2 cut(s)	672, 816
PspPI	GGNCC	1 cut(s)	86
PstI	CTGCAG	2 cut(s)	689, 1045
PstNI	CAGNNNCTG	1 cut(s)	1214
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	1040
RsaI	GTAC	4 cut(s)	279, 716, 1001, 1317
RsaNI	GTAC	4 cut(s)	278, 715, 1000, 1316
RseI	CAYNNNNRTG	1 cut(s)	710
SacI	GAGCTC	1 cut(s)	611
SapI	GCTCTTC	1 cut(s)	1076
SaqAI	TTAA	7 cut(s)	186, 659, 719, 752, 894, 1056, 1331
SatI	GCNGC	6 cut(s)	688, 1038, 1041, 1044, 1158, 1201
Sau3AI	GATC	5 cut(s)	4, 501, 586, 670, 973
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	2 cut(s)	307, 611
SfaNI	GCATC	5 cut(s)	388, 938, 944, 976, 1018
SfcI	CTRYAG	3 cut(s)	685, 1032, 1041
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	1289
SmoI	CTYRAG	1 cut(s)	1289
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	6 cut(s)	78, 122, 570, 700, 1140, 1181
SsiI	CCGC	3 cut(s)	884, 1158, 1294
SspMI	CTAG	2 cut(s)	108, 450
SstI	GAGCTC	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	1 cut(s)	898
TaaI	ACNGT	5 cut(s)	344, 514, 880, 1315, 1320
TaqI	TCGA	4 cut(s)	7, 219, 972, 1260
TasI	AATT	6 cut(s)	78, 122, 570, 700, 1140, 1181
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	1 cut(s)	1160
TfiI	GAWTC	3 cut(s)	1067, 1186, 1217
Tru1I	TTAA	7 cut(s)	186, 659, 719, 752, 894, 1056, 1331
Tru9I	TTAA	7 cut(s)	186, 659, 719, 752, 894, 1056, 1331
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	5 cut(s)	687, 1037, 1040, 1043, 1200
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	6 cut(s)	422, 526, 545, 694, 826, 1059
TspGWI	ACGGA	1 cut(s)	682
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	3 cut(s)	570, 700, 1140
XbaI	TCTAGA	1 cut(s)	449
XceI	RCATGY	1 cut(s)	1270
XmnI	GAANNNNTTC	1 cut(s)	1185
XspI	CTAG	2 cut(s)	108, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.