pycom13g02350

Homeobox-leucine zipper protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
1619471 .. 1620934
1464 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 513 bp
ATGTGCCCCACCCCATGCCATCCTTTTTCCTCTGCATCGCTGATCAAACTCTCAACGGCCCTGATTCAATCATTTATCATGAAGTACGTTGTCCTCATACATGTTGATGGGTCGCCCAAACTACATATATCCTCGTCCCATCCGTACTTTTTATGTTCTTTTTACTCCTTTGCCCTTCCACCATTTTTATTTGTTTTGTGTGGTTTTCATCTCTGTCTCTTCCTGTTTTCACTTTACCCTTTCCCCTCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCGTCCTCCTTTCTTCTTTCTCTTCATTCTTCATCTTCTATCTCACACCTGCGACTAGCTAGGGTTTCTATGGCGGTTTTACCGACGGCGATGGGATCGTCGAGCTTGGAGTTGACTATGTCCGTACCTGGCTTCTCTTCGTACCCGTCTTTTCCTAATTCATCTGTGAGAGACTTGGACATAAACCAAATACCATCACTACAAGGAGATCGTTGTTTGGTTAAGAAGAATGGATGA

Protein Analysis

171

Amino Acids

18.54

Weight (kDa)

8.82

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 333
Acc36I ACCTGC 1 cut(s) 333
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 379
AfaI GTAC 4 cut(s) 86, 146, 402, 419
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 2 cut(s) 335, 381
AluI AGCT 2 cut(s) 335, 381
Alw26I GTCTC 2 cut(s) 221, 441
AlwI GGATC 1 cut(s) 379
AoxI GGCC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 8
BccI CCATC 5 cut(s) 27, 101, 147, 361, 478
BceAI ACGGC 2 cut(s) 72, 378
BciT130I CCWGG 1 cut(s) 405
BclI TGATCA 1 cut(s) 42
BcoDI GTCTC 2 cut(s) 221, 441
BfaI CTAG 2 cut(s) 332, 336
BfuAI ACCTGC 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 2 cut(s) 19, 139
BseSI GKGCMC 1 cut(s) 8
BshFI GGCC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 221, 441
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 42, 371, 484
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 59
BspHI TCATGA 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 333
BspPI GGATC 1 cut(s) 379
BssMI GATC 3 cut(s) 42, 371, 484
Bst2UI CCWGG 1 cut(s) 405
Bst6I CTCTTC 3 cut(s) 224, 303, 418
BstF5I GGATG 2 cut(s) 19, 139
BstKTI GATC 3 cut(s) 45, 374, 487
BstMAI GTCTC 2 cut(s) 221, 441
BstMBI GATC 3 cut(s) 42, 371, 484
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 403
BstSLI GKGCMC 1 cut(s) 8
BsuRI GGCC 1 cut(s) 59
BtgZI GCGATG 2 cut(s) 21, 380
BtsCI GGATG 2 cut(s) 19, 139
BveI ACCTGC 1 cut(s) 333
CciI TCATGA 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 4 cut(s) 85, 145, 401, 418
CviAII CATG 3 cut(s) 15, 79, 101
CviJI RGCY 4 cut(s) 59, 335, 381, 408
CviKI_1 RGCY 4 cut(s) 59, 335, 381, 408
CviQI GTAC 4 cut(s) 85, 145, 401, 418
DpnI GATC 3 cut(s) 44, 373, 486
DpnII GATC 3 cut(s) 42, 371, 484
Eam1104I CTCTTC 3 cut(s) 224, 303, 418
EarI CTCTTC 3 cut(s) 224, 303, 418
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 3 cut(s) 18, 82, 104
FaqI GGGAC 1 cut(s) 121
FatI CATG 3 cut(s) 14, 78, 100
FbaI TGATCA 1 cut(s) 42
FokI GGATG 2 cut(s) 6, 126
FspBI CTAG 2 cut(s) 332, 336
HaeIII GGCC 1 cut(s) 59
Hin1II CATG 3 cut(s) 18, 82, 104
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 390
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 390
Hpy99I CGWCG 2 cut(s) 364, 379
HpyAV CCTTC 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 3 cut(s) 18, 82, 104
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 3 cut(s) 42, 371, 484
LpnPI CCDG 5 cut(s) 74, 236, 338, 390, 417
LweI GCATC 1 cut(s) 44
MaeI CTAG 2 cut(s) 332, 336
MaeII ACGT 1 cut(s) 87
MalI GATC 3 cut(s) 44, 373, 486
MboI GATC 3 cut(s) 42, 371, 484
MboII GAAGA 6 cut(s) 211, 281, 290, 297, 303, 405
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 433
MnlI CCTC 6 cut(s) 40, 104, 142, 256, 264, 292
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
NdeII GATC 3 cut(s) 42, 371, 484
NlaIII CATG 3 cut(s) 18, 82, 104
NspI RCATGY 1 cut(s) 104
PagI TCATGA 1 cut(s) 78
PaqCI CACCTGC 1 cut(s) 333
PciI ACATGT 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 394
PscI ACATGT 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspPI GGNCC 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 4 cut(s) 86, 146, 402, 419
RsaNI GTAC 4 cut(s) 85, 145, 401, 418
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 498
Sau3AI GATC 3 cut(s) 42, 371, 484
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 90, 327, 337, 383, 406
SfaNI GCATC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 1 cut(s) 433
SsiI CCGC 1 cut(s) 350
SspMI CTAG 2 cut(s) 332, 336
StyD4I CCNGG 1 cut(s) 403
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 377
TasI AATT 1 cut(s) 433
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TspDTI ATGAA 5 cut(s) 95, 197, 290, 297, 426
TspGWI ACGGA 2 cut(s) 132, 388
Tth111I GACNNNGTC 1 cut(s) 394
XceI RCATGY 1 cut(s) 104
XspI CTAG 2 cut(s) 332, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.