pycom13g02500

Large subunit GTPase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Reverse (-)
1731264 .. 1732028
765 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
ATGGACTCCCTCCAAAATACAACACATTTAAATGTGTATTTAGAGGGCGTGAGAGTATCATTTCACTCAAGGACTTTCGTGCACAATTGCTCGCTGAGGAAGCCATTGTGGATTGTGCTCTTGTTGAATGTGAGACAAAAGGTTCTTTCTTTCCTCTCTTTAGCTCTCAATTTCATGCTGGCTTTAGTGGTGGTTATCATGCTCAATCCAATTTTAGGTCAAGCTATGGTAATAATGTCGATAGTTATAATGGAATTCTTGGCTCACCTCCATCTCCATATCCTAGTTCTCTGGCACCTGAAATTACTACACATCAAATTTTGTTCACAAAAAGATCATTGTGATGCTGATTGTCTCTCAGCTTCTAGTAATGTAGTTATGGGATTTGTTGGATATCCAAATGTGGGAAACAACTTATTTGAGCAGCATAAATCATACTCCTCTAAGAATGAACACTTTGTAGATGATGAAGGTGAAGACGAGCCAGAGCTTGATCATGTCCTAGAAGACTTCAATTCATTTGACTTAGCTAATGGGCTGGTTACCAAGAAGAAAGTCACTGTCAGAAAACCCACTGCACCCCATAAACAACACAAAAATTATGAAACTCCTTTACAGAACAATTCTAATGTTGAAATTCATACAGCTTATGATCGCCAGTCTGGTTTTCTCTCTTACTTCATTGTTTCAGAAGATGAAATGTGTTTAGATGATGCAGAAAAACAAGTTTTGGAATGTATTGACAAGGAAAGTGCAAACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010154 GO:0010467 GO:0010646 GO:0010817 GO:0012505 GO:0015030 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016072 GO:0016462 GO:0016604 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022414 GO:0022613 GO:0023051 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042254 GO:0042886 GO:0043021 GO:0043022 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046626 GO:0046907 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048583 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051049 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090069 GO:0090070 GO:0090304 GO:0097159 GO:0097367 GO:0099402 GO:1900076 GO:1901265 GO:1901360 GO:1901363 GO:2000012
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

255

Amino Acids

28.99

Weight (kDa)

5.79

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 294
AcsI RAATTY 3 cut(s) 254, 317, 636
AfiI CCNNNNNNNGG 2 cut(s) 215, 404
AgsI TTSAA 3 cut(s) 127, 514, 635
AluBI AGCT 6 cut(s) 164, 224, 362, 490, 530, 647
AluI AGCT 6 cut(s) 164, 224, 362, 490, 530, 647
Alw21I GWGCWC 2 cut(s) 84, 120
Alw26I GTCTC 2 cut(s) 127, 359
Alw44I GTGCAC 1 cut(s) 80
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 424
ApoI RAATTY 3 cut(s) 254, 317, 636
AsuHPI GGTGA 2 cut(s) 257, 485
BaeGI GKGCMC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 294
BbsI GAAGAC 2 cut(s) 483, 513
Bbv12I GWGCWC 2 cut(s) 84, 120
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 436
BccI CCATC 1 cut(s) 279
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 2 cut(s) 127, 359
BfaI CTAG 3 cut(s) 284, 366, 503
BisI GCNGC 1 cut(s) 425
BlsI GCNGC 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 296
BmsI GCATC 2 cut(s) 334, 703
BpiI GAAGAC 2 cut(s) 483, 513
Bpu10I CCTNAGC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 404
Bse1I ACTGG 1 cut(s) 658
BseLI CCNNNNNNNGG 2 cut(s) 215, 404
BseMII CTCAG 2 cut(s) 86, 372
BseNI ACTGG 1 cut(s) 658
BseRI GAGGAG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 1 cut(s) 436
BsgI GTGCAG 1 cut(s) 561
BshNI GGYRCC 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 84, 120
BslI CCNNNNNNNGG 2 cut(s) 215, 404
BsmAI GTCTC 2 cut(s) 127, 359
Bsp1286I GDGCHC 2 cut(s) 84, 120
Bsp143I GATC 3 cut(s) 334, 493, 652
BspCNI CTCAG 2 cut(s) 87, 371
BspLI GGNNCC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 294
BsrI ACTGG 1 cut(s) 658
BssMI GATC 3 cut(s) 334, 493, 652
Bst4CI ACNGT 1 cut(s) 562
BstC8I GCNNGC 2 cut(s) 92, 180
BstDEI CTNAG 5 cut(s) 95, 358, 444, 526, 762
BstEII GGTNACC 1 cut(s) 541
BstKTI GATC 3 cut(s) 337, 496, 655
BstMAI GTCTC 2 cut(s) 127, 359
BstMBI GATC 3 cut(s) 334, 493, 652
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstPI GGTNACC 1 cut(s) 541
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 436
BstV2I GAAGAC 2 cut(s) 483, 513
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 558, 573
Cac8I GCNNGC 2 cut(s) 92, 180
CviAII CATG 3 cut(s) 175, 199, 497
DdeI CTNAG 5 cut(s) 95, 358, 444, 526, 762
DpnI GATC 3 cut(s) 336, 495, 654
DpnII GATC 3 cut(s) 334, 493, 652
DraI TTTAAA 1 cut(s) 30
Eco32I GATATC 1 cut(s) 395
Eco91I GGTNACC 1 cut(s) 541
EcoO65I GGTNACC 1 cut(s) 541
EcoRI GAATTC 1 cut(s) 254
EcoRV GATATC 1 cut(s) 395
FaeI CATG 3 cut(s) 178, 202, 500
FatI CATG 3 cut(s) 174, 198, 496
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 425
Fsp4HI GCNGC 1 cut(s) 425
FspBI CTAG 3 cut(s) 284, 366, 503
GluI GCNGC 1 cut(s) 425
Hin1II CATG 3 cut(s) 178, 202, 500
HinfI GANTC 1 cut(s) 5
HphI GGTGA 2 cut(s) 257, 485
Hpy166II GTNNAC 2 cut(s) 82, 326
Hpy188I TCNGA 2 cut(s) 566, 691
Hpy8I GTNNAC 2 cut(s) 82, 326
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 4 cut(s) 82, 578, 716, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 95, 358, 444, 526, 762
Hsp92II CATG 3 cut(s) 178, 202, 500
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 3 cut(s) 334, 493, 652
LpnPI CCDG 7 cut(s) 164, 277, 311, 498, 524, 648, 671
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 2 cut(s) 334, 703
MaeI CTAG 3 cut(s) 284, 366, 503
MaeIII GTNAC 2 cut(s) 541, 556
MalI GATC 3 cut(s) 336, 495, 654
MboI GATC 3 cut(s) 334, 493, 652
MboII GAAGA 4 cut(s) 488, 518, 562, 704
MfeI CAATTG 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 84, 120
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 6 cut(s) 20, 37, 90, 164, 278, 451
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 2 cut(s) 30, 342
MunI CAATTG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 3 cut(s) 334, 493, 652
NlaIII CATG 3 cut(s) 178, 202, 500
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 556
PkrI GCNGC 1 cut(s) 426
PsiI TTATAA 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 541
PspN4I GGNNCC 1 cut(s) 296
RseI CAYNNNNRTG 2 cut(s) 30, 342
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 425
Sau3AI GATC 3 cut(s) 334, 493, 652
SduI GDGCHC 2 cut(s) 84, 120
SfaNI GCATC 2 cut(s) 334, 703
SmiI ATTTAAAT 1 cut(s) 30
SmiMI CAYNNNNRTG 2 cut(s) 30, 342
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SspMI CTAG 3 cut(s) 284, 366, 503
SwaI ATTTAAAT 1 cut(s) 30
TaaI ACNGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 239
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 565, 580
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 8 cut(s) 163, 465, 483, 507, 618, 629, 670, 711
TspRI CASTG 2 cut(s) 565, 580
VneI GTGCAC 1 cut(s) 80
XapI RAATTY 3 cut(s) 254, 317, 636
XspI CTAG 3 cut(s) 284, 366, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.