Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1945939 .. 1946882

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCAATCTTTATTGTTTCAGGTCAAAAGAACACTGGGGCAATTCACACCAGCTCAGTGGGACAAGGACGAATGGCATCCCTTGCTTGGTCCATGGCGTTTCATTCAAGTCCTCACTCTTTGTATTGTATTCATGACAGTAGAGCTTAATACATTCTTTCTTAAGTTCTGTTTATGGATTCCTCCCCGGAACCCCTTGATAGTGTATAGGTTGATCCTGTGGTGGCTAATTGCAATTCCGACAATTCGCGAGTACAATTCATACCTTCAAGGGAGGATCGATCGAAAACCAGTGAAGAAGGTTGGGGCATTTTGTTGGCTTTCCGTAGCTATTTGCATCATTGAACTTCTCATTTGCATCAAGTTTGGACATGTCAATGCCATTATGGCTGGTAACGTTTTGGGCATCTACCGGAGCGGCCCTCGTAATATTTTTGATAATTTGGTCGTGGCAACTGCATCAAAGTTTACGGCGAAAGAGGCAATGAATTTACAATTGTGTACATCATTCTTTGACTTGCTTCTTCGTCTCAAAAGGGTTTCGATATCGATCGGCATTGTAAATATTAATCAGCTTTTTGTTAATTCCTATAGATTAGCGGATCACACTTCCTTGAGTAGAGGATTTTATTCATTTCCTAGGCAGCTCGTAAAATTACTGGTTTTGTCCCCATTACCGGCAGAAAATTTTCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

233

Amino Acids

26.77

Weight (kDa)

9.81

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSS	PF03034	7 - 123	2e-34	Phosphatidyl serine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	417
AccII	CGCG	1 cut(s)	249
AciI	CCGC	2 cut(s)	417, 599
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	3 cut(s)	208, 284, 609
AcsI	RAATTY	2 cut(s)	487, 685
AfaI	GTAC	2 cut(s)	254, 502
AfiI	CCNNNNNNNGG	2 cut(s)	86, 676
AflII	CTTAAG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	107, 269, 344, 692
AluBI	AGCT	5 cut(s)	53, 145, 329, 574, 646
AluI	AGCT	5 cut(s)	53, 145, 329, 574, 646
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	3 cut(s)	208, 284, 609
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	2 cut(s)	487, 685
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	687
AspA2I	CCTAGG	1 cut(s)	638
AspS9I	GGNCC	2 cut(s)	89, 419
AsuC2I	CCSGG	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	89
AvrII	CCTAGG	1 cut(s)	638
BbvI	GCAGC	1 cut(s)	655
BceAI	ACGGC	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	589
BfrI	CTTAAG	1 cut(s)	161
BglI	GCCNNNNNGGC	1 cut(s)	386
BisI	GCNGC	2 cut(s)	418, 644
BlnI	CCTAGG	1 cut(s)	638
BlsI	GCNGC	2 cut(s)	419, 645
Bme1390I	CCNGG	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	89, 419
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	5 cut(s)	85, 345, 366, 414, 467
BmuI	ACTGGG	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
BpuEI	CTTGAG	1 cut(s)	634
BpuMI	CCSGG	1 cut(s)	187
Bsa29I	ATCGAT	2 cut(s)	279, 548
BsaBI	GATNNNNATC	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	92, 185, 638
BsaWI	WCCGGW	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 676
Bse118I	RCCGGY	1 cut(s)	676
Bse1I	ACTGG	3 cut(s)	39, 290, 663
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	548
BseCI	ATCGAT	2 cut(s)	279, 548
BseDI	CCNNGG	3 cut(s)	92, 185, 638
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	548
BseLI	CCNNNNNNNGG	2 cut(s)	86, 676
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	3 cut(s)	39, 290, 663
BseXI	GCAGC	1 cut(s)	655
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	2 cut(s)	283, 552
BshFI	GGCC	1 cut(s)	420
BshVI	ATCGAT	2 cut(s)	279, 548
BsiEI	CGRYCG	2 cut(s)	283, 552
BsiSI	CCGG	3 cut(s)	187, 412, 677
BslFI	GGGAC	2 cut(s)	74, 652
BslI	CCNNNNNNNGG	2 cut(s)	86, 676
BsmAI	GTCTC	1 cut(s)	533
BsmBI	CGTCTC	1 cut(s)	533
BsmFI	GGGAC	2 cut(s)	74, 652
BsnI	GGCC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	500
Bsp143I	GATC	5 cut(s)	213, 276, 280, 549, 601
Bsp19I	CCATGG	1 cut(s)	92
Bsp68I	TCGCGA	1 cut(s)	249
BspACI	CCGC	2 cut(s)	417, 599
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	2 cut(s)	279, 548
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	3 cut(s)	208, 284, 609
BspTI	CTTAAG	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	676
BsrGI	TGTACA	1 cut(s)	500
BsrI	ACTGG	3 cut(s)	39, 290, 663
BssAI	RCCGGY	1 cut(s)	676
BssECI	CCNNGG	3 cut(s)	92, 185, 638
BssMI	GATC	5 cut(s)	213, 276, 280, 549, 601
BssT1I	CCWWGG	2 cut(s)	92, 638
Bst4CI	ACNGT	1 cut(s)	139
BstAFI	CTTAAG	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstAUI	TGTACA	1 cut(s)	500
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	5 cut(s)	216, 279, 283, 552, 604
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	5 cut(s)	213, 276, 280, 549, 601
BstMCI	CGRYCG	2 cut(s)	283, 552
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 386, 479
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	589
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	655
BstXI	CCANNNNNNTGG	1 cut(s)	57
Bsu15I	ATCGAT	2 cut(s)	279, 548
BsuRI	GGCC	1 cut(s)	420
BsuTUI	ATCGAT	2 cut(s)	279, 548
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	3 cut(s)	32, 62, 297
BtuMI	TCGCGA	1 cut(s)	249
CciI	TCATGA	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	89, 419
ClaI	ATCGAT	2 cut(s)	279, 548
Csp6I	GTAC	2 cut(s)	253, 501
CviAII	CATG	3 cut(s)	93, 133, 371
CviJI	RGCY	9 cut(s)	53, 145, 226, 319, 329, 389, 420, 574, 646
CviKI_1	RGCY	9 cut(s)	53, 145, 226, 319, 329, 389, 420, 574, 646
CviQI	GTAC	2 cut(s)	253, 501
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	5 cut(s)	215, 278, 282, 551, 603
DpnII	GATC	5 cut(s)	213, 276, 280, 549, 601
Eco130I	CCWWGG	2 cut(s)	92, 638
Eco32I	GATATC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	92, 638
ErhI	CCWWGG	2 cut(s)	92, 638
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	3 cut(s)	96, 136, 374
FaiI	YATR	8 cut(s)	94, 134, 175, 207, 262, 372, 386, 591
FaqI	GGGAC	2 cut(s)	74, 652
FatI	CATG	3 cut(s)	92, 132, 370
Fnu4HI	GCNGC	2 cut(s)	418, 644
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	418, 644
FspBI	CTAG	1 cut(s)	639
GluI	GCNGC	2 cut(s)	418, 644
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	3 cut(s)	187, 412, 677
Hin1II	CATG	3 cut(s)	96, 136, 374
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	187, 412, 677
Hpy166II	GTNNAC	2 cut(s)	468, 501
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	133, 248
Hpy8I	GTNNAC	2 cut(s)	468, 501
HpyAV	CCTTC	2 cut(s)	275, 292
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	5 cut(s)	4, 233, 336, 357, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 386, 479
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	3 cut(s)	96, 136, 374
Kzo9I	GATC	5 cut(s)	213, 276, 280, 549, 601
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	655
LweI	GCATC	5 cut(s)	85, 345, 366, 414, 467
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	5 cut(s)	215, 278, 282, 551, 603
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	5 cut(s)	213, 276, 280, 549, 601
MboII	GAAGA	2 cut(s)	307, 515
MfeI	CAATTG	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	6 cut(s)	122, 192, 267, 432, 472, 614
MroXI	GAANNNNTTC	1 cut(s)	687
MseI	TTAA	4 cut(s)	147, 162, 567, 582
MslI	CAYNNNNRTG	1 cut(s)	375
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	3 cut(s)	187, 412, 677
MspR9I	CCNGG	1 cut(s)	187
MunI	CAATTG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	82, 386, 479
NciI	CCSGG	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	5 cut(s)	213, 276, 280, 549, 601
NlaIII	CATG	3 cut(s)	96, 136, 374
NlaIV	GGNNCC	1 cut(s)	191
NruI	TCGCGA	1 cut(s)	249
NspI	RCATGY	1 cut(s)	374
PagI	TCATGA	1 cut(s)	132
PciI	ACATGT	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	419, 645
Ple19I	CGATCG	2 cut(s)	283, 552
PscI	ACATGT	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	2 cut(s)	89, 419
PvuI	CGATCG	2 cut(s)	283, 552
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	2 cut(s)	254, 502
RsaNI	GTAC	2 cut(s)	253, 501
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	4 cut(s)	147, 162, 567, 582
SatI	GCNGC	2 cut(s)	418, 644
Sau3AI	GATC	5 cut(s)	213, 276, 280, 549, 601
Sau96I	GGNCC	2 cut(s)	89, 419
ScrFI	CCNGG	1 cut(s)	187
SfaNI	GCATC	5 cut(s)	85, 345, 366, 414, 467
SfcI	CTRYAG	1 cut(s)	589
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	161, 613
SmoI	CTYRAG	2 cut(s)	161, 613
SsiI	CCGC	2 cut(s)	417, 599
SspI	AATATT	2 cut(s)	430, 565
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	92, 638
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	4 cut(s)	279, 283, 542, 548
TatI	WGTACW	2 cut(s)	252, 500
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	4 cut(s)	147, 162, 567, 582
Tru9I	TTAA	4 cut(s)	147, 162, 567, 582
TscAI	CASTG	3 cut(s)	39, 62, 297
TseI	GCWGC	1 cut(s)	643
TspDTI	ATGAA	5 cut(s)	91, 121, 249, 500, 621
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	3 cut(s)	39, 62, 297
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	2 cut(s)	487, 685
XceI	RCATGY	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.