Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1947795 .. 1949773

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGCCTAATGGTCACAGGAGAGCGAGGAGAAAGGATGTTCTAGAAAATGGTGACATGGGTCAGTCAAATACAGGCGATGAACTGGATCCATGGACTGCATGGGCATACAAGCCTCGGACCATTTCGATGCTGCTTATTGGCGCATGTTTCCTTATTTGGGTAAGTGGAGCCCTAGACCCAGAAAGCAGTGCATCTGGAGATGTTGTTACATCCGTAAAAAGGGGTATATGGGCGATGATTACAGTTTTTCTTGCTTATTGCTTGCTGCAAGCCCCGTCTACGGTTCTTATCAGACCTCATCCTGCAATCTGGCGCTTGGTTCATGGAATGGCTGTTGTTTACCTTATTTCTCTCACATTTTTGCTTTTCCAGAAACGTGACAATGCTCGGCAGTTTATGAAGTTTCTCCATCCAGATCTTGGTGTTGAACTTCCAGAAAAATCTTATGGTGCTGATTGTCGCATATATTTGCCTGAAAATCCTACTAACAGGAAACACTTTTTGATGAATTTGTTGTGGCTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0006575 GO:0006629 GO:0006644 GO:0006650 GO:0006658 GO:0006659 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019637 GO:0019953 GO:0022402 GO:0022414 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0031984 GO:0032501 GO:0032502 GO:0034293 GO:0042175 GO:0042398 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045017 GO:0046474 GO:0046486 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071704 GO:0090407 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PSS

Protein Analysis

177

Amino Acids

20.04

Weight (kDa)

8.84

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSS	PF03034	100 - 160	8.2e-21	Phosphatidyl serine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	83, 96
AcsI	RAATTY	1 cut(s)	511
AfiI	CCNNNNNNNGG	4 cut(s)	160, 222, 283, 422
AgsI	TTSAA	1 cut(s)	431
AlwI	GGATC	2 cut(s)	83, 96
ApeKI	GCWGC	2 cut(s)	133, 268
ApoI	RAATTY	1 cut(s)	511
AspLEI	GCGC	2 cut(s)	146, 318
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	120, 255
BccI	CCATC	1 cut(s)	420
BfaI	CTAG	2 cut(s)	44, 176
BfoI	RGCGCY	1 cut(s)	319
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	2 cut(s)	134, 269
BlsI	GCNGC	2 cut(s)	135, 270
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	3 cut(s)	6, 90, 172
BmsI	GCATC	2 cut(s)	120, 203
BoxI	GACNNNNGTC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	92, 116
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 222, 283, 422
Bse1I	ACTGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	92, 116
BseGI	GGATG	4 cut(s)	43, 212, 301, 412
BseLI	CCNNNNNNNGG	4 cut(s)	160, 222, 283, 422
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	120, 255
BslI	CCNNNNNNNGG	4 cut(s)	160, 222, 283, 422
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	88, 418
Bsp19I	CCATGG	1 cut(s)	92
BspLI	GGNNCC	3 cut(s)	6, 90, 172
BspPI	GGATC	2 cut(s)	83, 96
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	92, 116
BssMI	GATC	2 cut(s)	88, 418
BssT1I	CCWWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	247, 286
BstC8I	GCNNGC	2 cut(s)	266, 273
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	4 cut(s)	43, 212, 301, 412
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	2 cut(s)	146, 318
BstKTI	GATC	2 cut(s)	91, 421
BstMBI	GATC	2 cut(s)	88, 418
BstNSI	RCATGY	1 cut(s)	150
BstPAI	GACNNNNGTC	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	120, 255
BstX2I	RGATCY	2 cut(s)	88, 418
BstYI	RGATCY	2 cut(s)	88, 418
BtgI	CCRYGG	1 cut(s)	92
BtgZI	GCGATG	2 cut(s)	93, 251
BtsCI	GGATG	4 cut(s)	43, 212, 301, 412
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	266, 273
CfoI	GCGC	2 cut(s)	146, 318
Cfr13I	GGNCC	1 cut(s)	120
CviAII	CATG	5 cut(s)	58, 93, 102, 147, 326
CviJI	RGCY	6 cut(s)	7, 115, 173, 275, 335, 523
CviKI_1	RGCY	6 cut(s)	7, 115, 173, 275, 335, 523
DpnI	GATC	2 cut(s)	90, 420
DpnII	GATC	2 cut(s)	88, 418
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	5 cut(s)	61, 96, 105, 150, 329
FatI	CATG	5 cut(s)	57, 92, 101, 146, 325
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	134, 269
FokI	GGATG	4 cut(s)	50, 199, 288, 399
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	134, 269
FspBI	CTAG	2 cut(s)	44, 176
GlaI	GCGC	2 cut(s)	145, 317
GluI	GCNGC	2 cut(s)	134, 269
GsuI	CTGGAG	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	319
HhaI	GCGC	2 cut(s)	146, 318
Hin1II	CATG	5 cut(s)	61, 96, 105, 150, 329
Hin6I	GCGC	2 cut(s)	144, 316
HinP1I	GCGC	2 cut(s)	144, 316
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	282, 343
Hpy188I	TCNGA	2 cut(s)	120, 296
Hpy188III	TCNNGA	5 cut(s)	44, 198, 373, 416, 437
Hpy8I	GTNNAC	2 cut(s)	282, 343
HpyCH4III	ACNGT	2 cut(s)	247, 286
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	101, 194, 271, 308
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	5 cut(s)	61, 96, 105, 150, 329
HspAI	GCGC	2 cut(s)	144, 316
Kzo9I	GATC	2 cut(s)	88, 418
LmnI	GCTCC	2 cut(s)	4, 170
Lsp1109I	GCAGC	2 cut(s)	120, 255
LweI	GCATC	2 cut(s)	120, 203
MaeI	CTAG	2 cut(s)	44, 176
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	4 cut(s)	14, 53, 208, 380
MalI	GATC	2 cut(s)	90, 420
MboI	GATC	2 cut(s)	88, 418
MflI	RGATCY	2 cut(s)	88, 418
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	1 cut(s)	511
MnlI	CCTC	3 cut(s)	21, 126, 309
MslI	CAYNNNNRTG	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	88, 418
NlaIII	CATG	5 cut(s)	61, 96, 105, 150, 329
NlaIV	GGNNCC	3 cut(s)	6, 90, 172
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	3 cut(s)	14, 53, 380
NspI	RCATGY	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	135, 270
PshAI	GACNNNNGTC	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	6, 90, 172
PspPI	GGNCC	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	88, 418
RseI	CAYNNNNRTG	1 cut(s)	128
SatI	GCNGC	2 cut(s)	134, 269
Sau3AI	GATC	2 cut(s)	88, 418
Sau96I	GGNCC	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	3 cut(s)	301, 348, 382
SfaNI	GCATC	2 cut(s)	120, 203
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	511
SspMI	CTAG	2 cut(s)	44, 176
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	247, 286
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	128
TasI	AATT	1 cut(s)	511
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	3 cut(s)	14, 53, 380
TseI	GCWGC	2 cut(s)	133, 268
Tsp45I	GTSAC	3 cut(s)	14, 53, 380
TspDTI	ATGAA	4 cut(s)	96, 314, 416, 524
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	511
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	150
XcmI	CCANNNNNNNNNTGG	2 cut(s)	99, 419
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	2 cut(s)	44, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.