Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2052463 .. 2052669

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTTTGTTTCGATATCTTTGCATTCTCTCGGAAGCCTTGTGGCATTCAATGCCATGGTTTCTATCACAAGCATCGGACTGTACATTGCTTATGCCCTACCCATCTTCTTTAGGGTGACCTTGGCACGCAAATCCCTTGTCCCAGGACCTGTCAACTTGGGACACTACGGGGTACTTTTGTTGGTTGAATTTCAGTTAATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005310 GO:0005313 GO:0005326 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0008028 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015172 GO:0015174 GO:0015175 GO:0015179 GO:0015180 GO:0015181 GO:0015185 GO:0015189 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015718 GO:0015800 GO:0015802 GO:0015804 GO:0015807 GO:0015808 GO:0015809 GO:0015812 GO:0015813 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022858 GO:0031224 GO:0031226 GO:0032328 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:1902022 GO:1902475 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

69

Amino Acids

7.34

Weight (kDa)

9.52

Isoelectric Point (pI)

25.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	2 cut(s)	83, 174
AgsI	TTSAA	2 cut(s)	49, 188
AjnI	CCWGG	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	188
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	146
BaeI	ACNNNNGTAYC	2 cut(s)	164, 197
BccI	CCATC	1 cut(s)	110
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	54, 120, 142
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	54, 120, 142
BseMI	GCAATG	1 cut(s)	84
BslFI	GGGAC	2 cut(s)	125, 174
BsmFI	GGGAC	2 cut(s)	125, 174
BsmI	GAATGC	2 cut(s)	22, 44
Bsp1407I	TGTACA	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	81
BssECI	CCNNGG	3 cut(s)	54, 120, 142
BssT1I	CCWWGG	2 cut(s)	54, 120
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	127
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	144
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	82, 173
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	1 cut(s)	36
CviKI_1	RGCY	1 cut(s)	36
CviQI	GTAC	2 cut(s)	82, 173
Eco130I	CCWWGG	2 cut(s)	54, 120
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	54, 120
ErhI	CCWWGG	2 cut(s)	54, 120
FaeI	CATG	1 cut(s)	58
FaiI	YATR	2 cut(s)	56, 93
FaqI	GGGAC	2 cut(s)	125, 174
FatI	CATG	1 cut(s)	54
Hin1II	CATG	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	32, 77
Hpy8I	GTNNAC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	129, 156, 162
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	97
MluCI	AATT	2 cut(s)	188, 198
MseI	TTAA	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	2 cut(s)	22, 44
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	54
NlaIII	CATG	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	115
PctI	GAATGC	2 cut(s)	22, 44
PpuMI	RGGWCCY	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	146
PspPPI	RGGWCCY	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	83, 174
RsaNI	GTAC	2 cut(s)	82, 173
SaqAI	TTAA	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	2 cut(s)	122, 151
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	146
Sse9I	AATT	2 cut(s)	188, 198
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	2 cut(s)	54, 120
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	11
TasI	AATT	2 cut(s)	188, 198
TatI	WGTACW	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.