pycom13g04180

PHD finger protein MALE MEIOCYTE DEATH

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
2812612 .. 2813010
399 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGGATTATTGGAGCATGCATCTTCTGTGCAACCGATCGATACCTATGATCATTCTGTTCGAGGAATGGTTAGCTATGGTTATTTATTGGGCATTAGGGGATGTGATGCGGGCTCTGTTGGCTTATCGAACGTTCATGGTTTTTCAAGTGGGATACACATTCAGTCAGGAAAGCTACGAGATCAGCCACTTCGCATACCAAATTTCACTGACCCACATTGCATCATTGGAGCTTCGAAAGATTGCCGAAGTTGTTGACGAGCATCATACACTGAGAGCATTACTTGTTAATATGGACATAGAAAATATGAACACACTCAAAGATCTTCCTTCTTTCTTGTTGGACATAGAAAATATGAGAGGATTATCAAGACAATTGACAACACAAAGAGCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.61

Weight (kDa)

5.66

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 109
AclI AACGTT 1 cut(s) 131
AcsI RAATTY 1 cut(s) 201
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 4 cut(s) 74, 174, 232, 392
AluI AGCT 4 cut(s) 74, 174, 232, 392
Alw21I GWGCWC 1 cut(s) 394
ApoI RAATTY 1 cut(s) 201
AsuII TTCGAA 1 cut(s) 235
BanII GRGCYC 2 cut(s) 115, 394
Bbv12I GWGCWC 1 cut(s) 394
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 1 cut(s) 48
BfuI GTATCC 1 cut(s) 146
BglII AGATCT 1 cut(s) 322
BmsI GCATC 4 cut(s) 28, 96, 230, 271
Bpu14I TTCGAA 1 cut(s) 235
Bsa29I ATCGAT 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 216
BseCI ATCGAT 1 cut(s) 38
BseGI GGATG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 394
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 115, 394
Bsp143I GATC 4 cut(s) 35, 48, 180, 322
BspACI CCGC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 38
BspT104I TTCGAA 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 216
BssMI GATC 4 cut(s) 35, 48, 180, 322
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 17, 111
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 4 cut(s) 38, 51, 183, 325
BstMBI GATC 4 cut(s) 35, 48, 180, 322
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
Bsu15I ATCGAT 1 cut(s) 38
BsuI GTATCC 1 cut(s) 146
BsuTUI ATCGAT 1 cut(s) 38
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 206, 269
Cac8I GCNNGC 2 cut(s) 17, 111
ClaI ATCGAT 1 cut(s) 38
CviAII CATG 2 cut(s) 16, 136
CviJI RGCY 7 cut(s) 74, 113, 122, 174, 186, 232, 392
CviKI_1 RGCY 7 cut(s) 74, 113, 122, 174, 186, 232, 392
DdeI CTNAG 1 cut(s) 272
DpnI GATC 4 cut(s) 37, 50, 182, 324
DpnII GATC 4 cut(s) 35, 48, 180, 322
Ecl136II GAGCTC 1 cut(s) 392
Eco24I GRGCYC 2 cut(s) 115, 394
Eco53kI GAGCTC 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 392
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 115, 394
FaeI CATG 2 cut(s) 19, 139
FatI CATG 2 cut(s) 15, 135
FauI CCCGC 1 cut(s) 102
FbaI TGATCA 1 cut(s) 48
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 2 cut(s) 115, 394
Hin1II CATG 2 cut(s) 19, 139
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 167, 369
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 339
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 19, 30, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 2 cut(s) 19, 139
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 4 cut(s) 35, 48, 180, 322
LmnI GCTCC 2 cut(s) 12, 229
LpnPI CCDG 1 cut(s) 152
LweI GCATC 4 cut(s) 28, 96, 230, 271
MaeII ACGT 1 cut(s) 131
MalI GATC 4 cut(s) 37, 50, 182, 324
MboI GATC 4 cut(s) 35, 48, 180, 322
MboII GAAGA 2 cut(s) 14, 317
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 115, 394
MluCI AATT 2 cut(s) 201, 374
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 2 cut(s) 55, 353
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 1 cut(s) 288
MunI CAATTG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 4 cut(s) 35, 48, 180, 322
NlaIII CATG 2 cut(s) 19, 139
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 1 cut(s) 19
NspV TTCGAA 1 cut(s) 235
PaeI GCATGC 1 cut(s) 19
Ple19I CGATCG 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 394
Psp1406I AACGTT 1 cut(s) 131
PsuI RGATCY 1 cut(s) 322
PvuI CGATCG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 4 cut(s) 35, 48, 180, 322
SduI GDGCHC 2 cut(s) 115, 394
SetI ASST 6 cut(s) 46, 76, 134, 176, 234, 394
SfaNI GCATC 4 cut(s) 28, 96, 230, 271
SfuI TTCGAA 1 cut(s) 235
SphI GCATGC 1 cut(s) 19
Sse9I AATT 2 cut(s) 201, 374
SsiI CCGC 1 cut(s) 109
SstI GAGCTC 1 cut(s) 394
TaiI ACGT 1 cut(s) 134
TaqI TCGA 5 cut(s) 38, 60, 127, 235, 394
TasI AATT 2 cut(s) 201, 374
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 213, 276
TspDTI ATGAA 2 cut(s) 124, 323
TspRI CASTG 2 cut(s) 213, 276
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 19
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.