pycom13g04560

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
3069863 .. 3070222
360 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGTGGATCGAAGAGACTATCTTAATGTTGATGGAGATCACGGGACACCTTGGTGATGGCGGCTGGCGTGTTCATCCTGTATGTAAAATCCACACAGGTGAACTAGCGATTGTGGTACAACTACCTCCTGATGCACCAGGATATTACAACATCAGACCGCCAAGATTGCTTCTTTATAATATGGAGAGCAAAATTTGCAGGATGTGTTCTTTTGATTTTCCTAAGTTTACTAGCGGATATCGGCTGAATCCGGCATTTTTTACGCTACTTACGAGTACGATGATAACTTTGTACCGTACGATGATTTTCCTGAGACATATTCTTCACCCGCCGGGAAGAAAAGTGATGGGAAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.81

Weight (kDa)

9.55

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AciI CCGC 4 cut(s) 60, 158, 234, 329
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 192
AfaI GTAC 4 cut(s) 117, 277, 293, 298
AjnI CCWGG 1 cut(s) 136
AleI CACNNNNGTG 2 cut(s) 51, 96
Alw26I GTCTC 2 cut(s) 8, 307
AlwI GGATC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 3 cut(s) 65, 110, 317
BccI CCATC 3 cut(s) 25, 50, 340
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 8, 307
BfaI CTAG 2 cut(s) 104, 231
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 2 cut(s) 138, 333
BmrFI CCNGG 2 cut(s) 138, 333
BmsI GCATC 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 2 cut(s) 73, 207
BseJI GATNNNNATC 1 cut(s) 35
BseMII CTCAG 1 cut(s) 302
BsiSI CCGG 2 cut(s) 251, 332
BsiWI CGTACG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 57
BsmAI GTCTC 2 cut(s) 8, 307
BsmFI GGGAC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 6, 36
BspACI CCGC 4 cut(s) 60, 158, 234, 329
BspCNI CTCAG 1 cut(s) 303
BspPI GGATC 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 2 cut(s) 6, 36
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 6
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 222, 311
BstF5I GGATG 2 cut(s) 73, 207
BstKTI GATC 2 cut(s) 9, 39
BstMAI GTCTC 2 cut(s) 8, 307
BstMBI GATC 2 cut(s) 6, 36
BstMWI GCNNNNNNNGC 2 cut(s) 166, 195
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 136, 331
BtsCI GGATG 2 cut(s) 73, 207
Cac8I GCNNGC 1 cut(s) 65
Csp6I GTAC 4 cut(s) 116, 276, 292, 297
CviJI RGCY 2 cut(s) 63, 244
CviKI_1 RGCY 2 cut(s) 63, 244
CviQI GTAC 4 cut(s) 116, 276, 292, 297
DdeI CTNAG 2 cut(s) 222, 311
DpnI GATC 2 cut(s) 8, 38
DpnII GATC 2 cut(s) 6, 36
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 49
Eco32I GATATC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 136
EcoRV GATATC 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaiI YATR 4 cut(s) 82, 177, 182, 318
FaqI GGGAC 1 cut(s) 57
FauI CCCGC 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 2 cut(s) 60, 214
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 104, 231
GluI GCNGC 1 cut(s) 61
HapII CCGG 2 cut(s) 251, 332
HinfI GANTC 1 cut(s) 247
HpaII CCGG 2 cut(s) 251, 332
HphI GGTGA 3 cut(s) 65, 110, 317
Hpy166II GTNNAC 2 cut(s) 101, 228
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 128, 310
Hpy8I GTNNAC 2 cut(s) 101, 228
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 134, 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 195
HpyF3I CTNAG 2 cut(s) 222, 311
Kzo9I GATC 2 cut(s) 6, 36
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 104, 231
MalI GATC 2 cut(s) 8, 38
MboI GATC 2 cut(s) 6, 36
MboII GAAGA 3 cut(s) 23, 314, 348
MluCI AATT 1 cut(s) 192
MnlI CCTC 1 cut(s) 135
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 51, 96
MspI CCGG 2 cut(s) 251, 332
MspR9I CCNGG 2 cut(s) 138, 333
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 166, 195
NciI CCSGG 1 cut(s) 333
NdeII GATC 2 cut(s) 6, 36
OliI CACNNNNGTG 2 cut(s) 51, 96
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PfeI GAWTC 1 cut(s) 247
Pfl23II CGTACG 1 cut(s) 296
PkrI GCNGC 1 cut(s) 62
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspLI CGTACG 1 cut(s) 296
RsaI GTAC 4 cut(s) 117, 277, 293, 298
RsaNI GTAC 4 cut(s) 116, 276, 292, 297
RseI CAYNNNNRTG 2 cut(s) 51, 96
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 2 cut(s) 6, 36
ScrFI CCNGG 2 cut(s) 138, 333
SetI ASST 3 cut(s) 51, 100, 127
SfaNI GCATC 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 51, 96
Sse9I AATT 1 cut(s) 192
SsiI CCGC 4 cut(s) 60, 158, 234, 329
SspMI CTAG 2 cut(s) 104, 231
StyD4I CCNGG 2 cut(s) 136, 331
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 192
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 62
XapI RAATTY 1 cut(s) 192
XspI CTAG 2 cut(s) 104, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.