pycom13g04710
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Forward (+)
3140371 .. 3142013
1643 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
ATGGAAATTAGGAAGGGAGGTAAAGCTTTGTGTTTTGTGGCCTTTTTCTGCTTGTGGAATTGTGCAACTGGTTTGCTTTCTCCAAAGGGTGTTAACTATGAAGTGCAAGCATTGGTGGGCATTAAAGGAGCTCTCGAGGATCCTCGCGGCGTTCTTCGAAATTGGGACGAGACTTCTGTTGATCCCTGCATCTGGAATATGGTTACTTGTTCTCCTGATGGTTTAGTCATTGGACTGGGAACTCCAAGCCAGAATTTATCAGGCACTTTGTCGCCATGCATTGGAAACTTGACAAATCTCCAGCTTGTTACATTTCAAGATAATCATATAACAGGAACAATCCCGGCCGAGCTTGGGAGGCTGCAAAAGCTTCAAACACTTGATCTCTCCAGCAACTTGTTCAATGGAGAAATTCCCAGCACTCTATCACGCCTGAAAAGCCTACAATACCTGCGGCTAAACAATAACACTCTCTCTGGGGCAATTCCTTCCTCTTTTGCTAACATGACTCAACTGGCGTTTCTGGACATGTCGTATAATAATTTGAGTGGTCCGGTCCCAAGGTTTCCTGCTAGAACATTCAATGTTGTGGGAAACCCTTTGATATGTGCCACTGGAAAGGAGCAAGACTGCTTCGGAACAACACGAACGCCGCAATCTTTGGCCTTGAATAATTCAACAATCTCAGCCTGCCGGGAGACCTAG

Protein Analysis

235

Amino Acids

25.26

Weight (kDa)

7.48

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 32 - 71 1.3e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 93 - 177 6.7e-12 Leucine-rich repeat region
LRR_8 PF13855 139 - 182 8.9e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 281
AccII CGCG 1 cut(s) 147
AciI CCGC 3 cut(s) 147, 454, 653
AclWI GGATC 3 cut(s) 134, 147, 176
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 2 cut(s) 253, 411
AfiI CCNNNNNNNGG 3 cut(s) 192, 281, 354
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 6 cut(s) 317, 374, 403, 583, 670, 678
AluBI AGCT 5 cut(s) 26, 131, 304, 352, 370
AluI AGCT 5 cut(s) 26, 131, 304, 352, 370
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 164, 692
AlwI GGATC 3 cut(s) 134, 147, 176
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 3 cut(s) 39, 345, 663
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 2 cut(s) 253, 411
AspS9I GGNCC 2 cut(s) 551, 556
AsuC2I CCSGG 2 cut(s) 344, 695
AsuII TTCGAA 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 2 cut(s) 551, 556
BamHI GGATCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 348
BccI CCATC 1 cut(s) 212
BcnI CCSGG 2 cut(s) 344, 695
BcoDI GTCTC 2 cut(s) 164, 692
BfaI CTAG 2 cut(s) 573, 703
BfuAI ACCTGC 1 cut(s) 459
BisI GCNGC 4 cut(s) 148, 362, 455, 653
BlsI GCNGC 4 cut(s) 149, 363, 456, 654
Bme1390I CCNGG 2 cut(s) 344, 695
Bme18I GGWCC 2 cut(s) 551, 556
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 551, 556
BmiI GGNNCC 2 cut(s) 141, 558
BmrFI CCNGG 2 cut(s) 344, 695
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 245
BpmI CTGGAG 2 cut(s) 284, 373
Bpu14I TTCGAA 1 cut(s) 157
BpuMI CCSGG 2 cut(s) 344, 695
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 1 cut(s) 560
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 281, 354
Bse1I ACTGG 4 cut(s) 73, 240, 519, 619
BseDI CCNNGG 1 cut(s) 560
BseLI CCNNNNNNNGG 3 cut(s) 192, 281, 354
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 4 cut(s) 73, 240, 519, 619
BseX3I CGGCCG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 348
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 3 cut(s) 41, 347, 665
BsiEI CGRYCG 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 344, 554, 694
BslFI GGGAC 2 cut(s) 179, 542
BslI CCNNNNNNNGG 3 cut(s) 192, 281, 354
BsmAI GTCTC 2 cut(s) 164, 692
BsmFI GGGAC 2 cut(s) 179, 542
BsnI GGCC 3 cut(s) 41, 347, 665
Bso31I GGTCTC 1 cut(s) 692
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 139, 181, 382
BspACI CCGC 3 cut(s) 147, 454, 653
BspANI GGCC 3 cut(s) 41, 347, 665
BspCNI CTCAG 1 cut(s) 698
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 141, 558
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 3 cut(s) 134, 147, 176
BspT104I TTCGAA 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 692
BsrI ACTGG 4 cut(s) 73, 240, 519, 619
BssECI CCNNGG 1 cut(s) 560
BssMI GATC 3 cut(s) 139, 181, 382
BssT1I CCWWGG 1 cut(s) 560
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 108, 691
BstDEI CTNAG 1 cut(s) 685
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 3 cut(s) 142, 184, 385
BstMAI GTCTC 2 cut(s) 164, 692
BstMBI GATC 3 cut(s) 139, 181, 382
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 3 cut(s) 358, 367, 438
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 342, 693
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BstZI CGGCCG 1 cut(s) 345
BsuRI GGCC 3 cut(s) 41, 347, 665
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 2 cut(s) 108, 691
Cfr13I GGNCC 2 cut(s) 551, 556
CviAII CATG 3 cut(s) 276, 505, 529
DdeI CTNAG 1 cut(s) 685
DpnI GATC 3 cut(s) 141, 183, 384
DpnII GATC 3 cut(s) 139, 181, 382
EaeI YGGCCR 1 cut(s) 345
EagI CGGCCG 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 131
EclXI CGGCCG 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 560
Eco24I GRGCYC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 692
Eco47I GGWCC 2 cut(s) 551, 556
Eco52I CGGCCG 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 560
EcoT22I ATGCAT 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 3 cut(s) 279, 508, 532
FaiI YATR 9 cut(s) 99, 200, 277, 327, 329, 506, 530, 537, 607
FaqI GGGAC 2 cut(s) 179, 542
FatI CATG 3 cut(s) 275, 504, 528
Fnu4HI GCNGC 4 cut(s) 148, 362, 455, 653
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 4 cut(s) 148, 362, 455, 653
FspBI CTAG 2 cut(s) 573, 703
GluI GCNGC 4 cut(s) 148, 362, 455, 653
GsaI CCCAGC 1 cut(s) 420
GsuI CTGGAG 2 cut(s) 284, 373
HaeIII GGCC 3 cut(s) 41, 347, 665
HapII CCGG 3 cut(s) 344, 554, 694
Hin1II CATG 3 cut(s) 279, 508, 532
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 24, 368
HinfI GANTC 1 cut(s) 508
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 3 cut(s) 344, 554, 694
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 638
Hpy188III TCNNGA 5 cut(s) 134, 193, 215, 317, 524
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 7, 498
HpyCH4V TGCA 5 cut(s) 65, 106, 189, 279, 364
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 367, 438
HpyF3I CTNAG 1 cut(s) 685
Hsp92II CATG 3 cut(s) 279, 508, 532
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 3 cut(s) 139, 181, 382
LmnI GCTCC 2 cut(s) 128, 622
Lsp1109I GCAGC 1 cut(s) 348
LweI GCATC 1 cut(s) 198
MaeI CTAG 2 cut(s) 573, 703
MaeIII GTNAC 2 cut(s) 202, 307
MalI GATC 3 cut(s) 141, 183, 384
MboI GATC 3 cut(s) 139, 181, 382
MboII GAAGA 1 cut(s) 146
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 8 cut(s) 6, 58, 160, 253, 411, 483, 541, 673
MlyI GAGTC 1 cut(s) 502
MnlI CCTC 5 cut(s) 11, 130, 153, 351, 502
Mph1103I ATGCAT 1 cut(s) 281
MseI TTAA 2 cut(s) 93, 123
MspI CCGG 3 cut(s) 344, 554, 694
MspR9I CCNGG 2 cut(s) 344, 695
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 358, 367, 438
NciI CCSGG 2 cut(s) 344, 695
NdeII GATC 3 cut(s) 139, 181, 382
NlaIII CATG 3 cut(s) 279, 508, 532
NlaIV GGNNCC 2 cut(s) 141, 558
NmeAIII GCCGAG 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 281
NspI RCATGY 1 cut(s) 532
NspV TTCGAA 1 cut(s) 157
PaeR7I CTCGAG 1 cut(s) 134
PciI ACATGT 1 cut(s) 528
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 4 cut(s) 149, 363, 456, 654
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PscI ACATGT 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 416
PspN4I GGNNCC 2 cut(s) 141, 558
PspPI GGNCC 2 cut(s) 551, 556
PsuI RGATCY 1 cut(s) 139
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 93, 123
SatI GCNGC 4 cut(s) 148, 362, 455, 653
Sau3AI GATC 3 cut(s) 139, 181, 382
Sau96I GGNCC 2 cut(s) 551, 556
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 2 cut(s) 344, 695
SduI GDGCHC 1 cut(s) 133
SetI ASST 9 cut(s) 22, 28, 133, 306, 354, 372, 453, 566, 704
SfaNI GCATC 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 157
SinI GGWCC 2 cut(s) 551, 556
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 8 cut(s) 6, 58, 160, 253, 411, 483, 541, 673
SsiI CCGC 3 cut(s) 147, 454, 653
SspMI CTAG 2 cut(s) 573, 703
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 2 cut(s) 342, 693
StyI CCWWGG 1 cut(s) 560
TaqI TCGA 2 cut(s) 135, 157
TasI AATT 8 cut(s) 6, 58, 160, 253, 411, 483, 541, 673
TauI GCSGC 3 cut(s) 150, 457, 655
Tru1I TTAA 2 cut(s) 93, 123
Tru9I TTAA 2 cut(s) 93, 123
TscAI CASTG 1 cut(s) 619
TseI GCWGC 1 cut(s) 361
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 551, 556
XapI RAATTY 2 cut(s) 253, 411
XceI RCATGY 1 cut(s) 532
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 2 cut(s) 573, 703
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.