Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3295468 .. 3296694

Gene Structure 1227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGACTGTGCCATCAATCCGGTCTGCAAGATGCAGTTTCTTTCCTCATGGATGCTGAAAGAACGGAGACTGGGCCTTCTGTTGTTTCTTTCAATACCATCATGTCTTGGTTCATTGGAACAAGCATTGGAGTTCACCAAAGACATAGAGAGGCATGGGGTACAGCCTGACACGGTAACTTACAACATTCTCTGTAAGGGGTTTCATCTACTTGGTTTGATGAGTGGAGCTCGCAATGTCATTCAGCAAATGTTGGTTAAAGGGTTGAATCCGAATCGTGTTACATATACAATTATGATATGTGGCCACTGCCATGTTGGCAACATTGACGAAGCCCTTAAGTTGCGGAAAGAGATGATTTCAAGAGATTTTCAGTTGAGTGTCATTATTTACAGTGTACTACTCAACGGTATGTGTAAAAGTGGACGGGTAGAAGAAACATTGGGATTGTTATATGAGATGGAAGCTGTTGGCTTGGAGCCAGATCTTATATCATATTCAATCCTCATTCAGGGTCTATGCAAGCATGGAGATGTACAAAGGGCTAGCGAAATATATAGAGAAATGTACAGGAAGAGAATCATTCCCAATTACTCTGCAAACCATGCTATTCTGTTAGGTCTGCGTGTGAAAGGGGATATTTATGAGGCAAGGAAGTATTTTGATCATCTGACGACAAGGGCTGTGACAGAGGATGTTGTGCTGTATAATATTATGATGGATGGGTATGTAAAACTAGGTAGTGTTGCAGAAGCCATACAATTATATAAACAAATAATTGAGAAGGGAATAAATCCTAGTACTGTCACTTTCAATACTCGTATTCATGGTTCCTGCAAAATTGGGAAACTAGTTGAGGCTCGAAGGATGTTGGATACCATCGAGCTGCATGGATTGCTACCCAGTCCAGTTACTTATACTACTCTTATGAATGCTAACTGTGAACAGGGAAACATCAAGGGCATGCTTGAATTACTTCGAGACATGGAAGCAAAAGCTGTAGAACCAACTCATGTATCTTACACGGTAGTTATTAAAGGACTTTGCAAACAGGGGAAGCTGTGGGATGCTGTTCACGTAGTCGAGAAAATGTATGCTAAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

369

Amino Acids

41.51

Weight (kDa)

8.52

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	37 - 68	8.6e-06	PPR repeat family
PPR_3	PF13812	47 - 100	2.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	72 - 105	1.1e-06	PPR repeat family
PPR_1	PF12854	87 - 119	1.3e-11	PPR repeat
PPR_2	PF13041	91 - 140	6e-13	PPR repeat family
PPR	PF01535	94 - 123	2.7e-08	PPR repeat
PPR_3	PF13812	115 - 171	8.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	125 - 155	5.1e-06	PPR repeat
PPR_2	PF13041	127 - 175	1.3e-13	PPR repeat family
PPR_3	PF13812	150 - 199	7.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	158 - 189	5.8e-11	PPR repeat
PPR_2	PF13041	164 - 197	3.4e-07	PPR repeat family
TPR_24	PF23276	164 - 259	2.9e-07	Fungal tetratrico peptide repeats
PPR	PF01535	164 - 193	6e-07	PPR repeat
PPR_2	PF13041	232 - 280	1.7e-13	PPR repeat family
PPR	PF01535	234 - 264	5.5e-07	PPR repeat
PPR_long	PF17177	245 - 367	1.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	262 - 293	3.4e-07	PPR repeat
PPR_2	PF13041	266 - 314	7.6e-10	PPR repeat family
PPR_3	PF13812	290 - 346	1.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	301 - 350	7.2e-14	PPR repeat family
PPR_1	PF12854	334 - 364	6.4e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	304
AfaI	GTAC	5 cut(s)	162, 399, 537, 569, 802
AfiI	CCNNNNNNNGG	1 cut(s)	511
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	6 cut(s)	93, 268, 363, 501, 814, 971
AhlI	ACTAGT	1 cut(s)	850
AluBI	AGCT	5 cut(s)	230, 467, 886, 998, 1060
AluI	AGCT	5 cut(s)	230, 467, 886, 998, 1060
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	2 cut(s)	61, 975
AoxI	GGCC	3 cut(s)	73, 304, 1101
ApeKI	GCWGC	1 cut(s)	886
Asp700I	GAANNNNTTC	1 cut(s)	975
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	127
AsuNHI	GCTAGC	1 cut(s)	545
BaeI	ACNNNNGTAYC	2 cut(s)	999, 1032
BalI	TGGCCA	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	873
BccI	CCATC	6 cut(s)	20, 106, 454, 712, 716, 887
BciVI	GTATCC	1 cut(s)	868
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	2 cut(s)	61, 975
BcuI	ACTAGT	1 cut(s)	850
BfaI	CTAG	4 cut(s)	546, 737, 798, 851
BfmI	CTRYAG	1 cut(s)	999
BfrI	CTTAAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	868
BglI	GCCNNNNNGGC	1 cut(s)	318
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	1 cut(s)	887
BlsI	GCNGC	1 cut(s)	888
BmcAI	AGTACT	1 cut(s)	802
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	2 cut(s)	480, 832
BmrI	ACTGGG	2 cut(s)	80, 897
BmsI	GCATC	3 cut(s)	21, 42, 1057
BmtI	GCTAGC	1 cut(s)	549
BmuI	ACTGGG	2 cut(s)	80, 897
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
Bpu10I	CCTNAGC	1 cut(s)	1098
BsaAI	YACGTR	1 cut(s)	1078
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	3 cut(s)	75, 903, 908
Bse3DI	GCAATG	1 cut(s)	241
BseGI	GGATG	5 cut(s)	57, 700, 727, 873, 1072
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMI	GCAATG	1 cut(s)	241
BseNI	ACTGG	3 cut(s)	75, 903, 908
BseXI	GCAGC	1 cut(s)	873
BshFI	GGCC	3 cut(s)	75, 306, 1103
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	2 cut(s)	61, 975
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	3 cut(s)	75, 306, 1103
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1407I	TGTACA	2 cut(s)	535, 567
Bsp143I	GATC	2 cut(s)	484, 664
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	3 cut(s)	75, 306, 1103
BspLI	GGNNCC	2 cut(s)	480, 832
BspOI	GCTAGC	1 cut(s)	549
BspTI	CTTAAG	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	241
BsrGI	TGTACA	2 cut(s)	535, 567
BsrI	ACTGG	3 cut(s)	75, 903, 908
BssMI	GATC	2 cut(s)	484, 664
Bst4CI	ACNGT	7 cut(s)	8, 175, 395, 410, 805, 941, 1027
Bst6I	CTCTTC	1 cut(s)	569
BstAFI	CTTAAG	1 cut(s)	338
BstAPI	GCANNNNNTGC	2 cut(s)	605, 895
BstAUI	TGTACA	2 cut(s)	535, 567
BstBAI	YACGTR	1 cut(s)	1078
BstC8I	GCNNGC	4 cut(s)	232, 524, 547, 965
BstDEI	CTNAG	1 cut(s)	1098
BstENI	CCTNNNNNAGG	1 cut(s)	509
BstF5I	GGATG	5 cut(s)	57, 700, 727, 873, 1072
BstKTI	GATC	2 cut(s)	487, 667
BstMAI	GTCTC	2 cut(s)	61, 975
BstMBI	GATC	2 cut(s)	484, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 605, 895
BstNSI	RCATGY	1 cut(s)	967
BstSFI	CTRYAG	1 cut(s)	999
BstV1I	GCAGC	1 cut(s)	873
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	3 cut(s)	75, 306, 1103
BtsCI	GGATG	5 cut(s)	57, 700, 727, 873, 1072
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	307, 400
Cac8I	GCNNGC	4 cut(s)	232, 524, 547, 965
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	5 cut(s)	161, 398, 536, 568, 801
CviQI	GTAC	5 cut(s)	161, 398, 536, 568, 801
DdeI	CTNAG	1 cut(s)	1098
DpnI	GATC	2 cut(s)	486, 666
DpnII	GATC	2 cut(s)	484, 664
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Ecl136II	GAGCTC	1 cut(s)	230
Eco147I	AGGCCT	1 cut(s)	1103
Eco24I	GRGCYC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	1 cut(s)	887
FokI	GGATG	5 cut(s)	64, 707, 734, 880, 1079
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	887
FspBI	CTAG	4 cut(s)	546, 737, 798, 851
GluI	GCNGC	1 cut(s)	887
HaeIII	GGCC	3 cut(s)	75, 306, 1103
HapII	CCGG	1 cut(s)	20
HinfI	GANTC	3 cut(s)	268, 274, 579
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	5 cut(s)	135, 398, 425, 944, 1075
Hpy188I	TCNGA	2 cut(s)	273, 672
Hpy188III	TCNNGA	3 cut(s)	363, 980, 1084
Hpy8I	GTNNAC	5 cut(s)	135, 398, 425, 944, 1075
HpyAV	CCTTC	3 cut(s)	86, 778, 858
HpyCH4III	ACNGT	7 cut(s)	8, 175, 395, 410, 805, 941, 1027
HpyCH4IV	ACGT	1 cut(s)	1077
HpyCH4V	TGCA	8 cut(s)	27, 34, 522, 599, 749, 837, 889, 1047
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 605, 895
HpyF3I	CTNAG	1 cut(s)	1098
HpySE526I	ACGT	1 cut(s)	1077
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	2 cut(s)	484, 664
LmnI	GCTCC	2 cut(s)	227, 478
Lsp1109I	GCAGC	1 cut(s)	873
LweI	GCATC	3 cut(s)	21, 42, 1057
MaeI	CTAG	4 cut(s)	546, 737, 798, 851
MaeII	ACGT	1 cut(s)	1077
MaeIII	GTNAC	5 cut(s)	175, 280, 685, 805, 910
MalI	GATC	2 cut(s)	486, 666
MboI	GATC	2 cut(s)	484, 664
MboII	GAAGA	2 cut(s)	446, 586
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	6 cut(s)	291, 589, 761, 777, 840, 971
MluNI	TGGCCA	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	852
MnlI	CCTC	6 cut(s)	55, 144, 515, 640, 685, 850
Mox20I	TGGCCA	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	3 cut(s)	258, 339, 1035
MslI	CAYNNNNRTG	2 cut(s)	312, 531
Msp20I	TGGCCA	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	937
MwoI	GCNNNNNNNGC	3 cut(s)	318, 605, 895
NdeII	GATC	2 cut(s)	484, 664
NheI	GCTAGC	1 cut(s)	545
NlaIV	GGNNCC	2 cut(s)	480, 832
NmuCI	GTSAC	2 cut(s)	685, 805
NspI	RCATGY	1 cut(s)	967
PaeI	GCATGC	1 cut(s)	967
PceI	AGGCCT	1 cut(s)	1103
PctI	GAATGC	1 cut(s)	937
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	3 cut(s)	268, 274, 579
PkrI	GCNGC	1 cut(s)	888
Ppu21I	YACGTR	1 cut(s)	1078
Psp124BI	GAGCTC	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	480, 832
PspPI	GGNCC	1 cut(s)	73
PsrI	GAACNNNNNNTAC	2 cut(s)	814, 846
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	5 cut(s)	162, 399, 537, 569, 802
RsaNI	GTAC	5 cut(s)	161, 398, 536, 568, 801
RseI	CAYNNNNRTG	2 cut(s)	312, 531
SacI	GAGCTC	1 cut(s)	232
SaqAI	TTAA	3 cut(s)	258, 339, 1035
SatI	GCNGC	1 cut(s)	887
Sau3AI	GATC	2 cut(s)	484, 664
Sau96I	GGNCC	1 cut(s)	73
ScaI	AGTACT	1 cut(s)	802
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	8 cut(s)	232, 469, 622, 742, 888, 1000, 1062, 1080
SfaNI	GCATC	3 cut(s)	21, 42, 1057
SfcI	CTRYAG	1 cut(s)	999
SmiMI	CAYNNNNRTG	2 cut(s)	312, 531
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	850
SphI	GCATGC	1 cut(s)	967
Sse9I	AATT	6 cut(s)	291, 589, 761, 777, 840, 971
SseBI	AGGCCT	1 cut(s)	1103
SsiI	CCGC	1 cut(s)	346
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	4 cut(s)	546, 737, 798, 851
SstI	GAGCTC	1 cut(s)	232
StuI	AGGCCT	1 cut(s)	1103
TaaI	ACNGT	7 cut(s)	8, 175, 395, 410, 805, 941, 1027
TaiI	ACGT	1 cut(s)	1080
TaqI	TCGA	4 cut(s)	862, 882, 979, 1083
TasI	AATT	6 cut(s)	291, 589, 761, 777, 840, 971
TatI	WGTACW	4 cut(s)	397, 535, 567, 800
TfiI	GAWTC	3 cut(s)	268, 274, 579
Tru1I	TTAA	3 cut(s)	258, 339, 1035
Tru9I	TTAA	3 cut(s)	258, 339, 1035
TscAI	CASTG	2 cut(s)	314, 400
TseFI	GTSAC	2 cut(s)	685, 805
TseI	GCWGC	1 cut(s)	886
Tsp45I	GTSAC	2 cut(s)	685, 805
TspDTI	ATGAA	4 cut(s)	102, 194, 815, 944
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	314, 400
Vha464I	CTTAAG	1 cut(s)	338
XagI	CCTNNNNNAGG	1 cut(s)	509
XceI	RCATGY	1 cut(s)	967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	4 cut(s)	546, 737, 798, 851
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.