pycom13g05120

Cytochrome p450

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
N/A
Physical Location & Seq
Reverse (-)
3432758 .. 3433167
410 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGCAGATGAGTACGATCATCAACGAGTCTCCAAAGTTATATCCTCCCGCGGTTTCCCTTAGGAGGAAAGCTGGAAGGGAAGTTAAACTGGGAAAGCTCATCATTGCACCTGAATTTTGGGGACAAGATGTGCACTTTTTCAAACCAGAACGATTCTCACACGGGATTGCTAAAGCTACTAACACTAATATAGTCACATTATTACCCTTTGAGATGGGACCGCAGAGTTGTGTGGGCTTGAACTTTGCAAAAAATGAAGTAGAGATTGTTTTGCCGATGATTCTACAGTGCTACGCTTTCACCCTCTCCCCGACCTATGTCCTCGCCCTTTCGACAGCAAAAAGTTCTGCGACATGGTAG

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

9.26

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 104 6e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AciI CCGC 3 cut(s) 48, 50, 221
AcsI RAATTY 1 cut(s) 113
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 2 cut(s) 142, 241
AluBI AGCT 3 cut(s) 71, 97, 176
AluI AGCT 3 cut(s) 71, 97, 176
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 33
Alw44I GTGCAC 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 292
AvaII GGWCC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 98
BoxI GACNNNNGTC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 93
Bse21I CCTNAGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 135
BslFI GGGAC 2 cut(s) 135, 231
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 135, 231
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 3 cut(s) 48, 50, 221
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 15
BstPAI GACNNNNGTC 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 284
BstSLI GKGCMC 1 cut(s) 135
BstUI CGCG 1 cut(s) 50
Bsu36I CCTNAGG 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 218
Cfr42I CCGCGG 1 cut(s) 51
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 354
CviJI RGCY 4 cut(s) 71, 97, 176, 237
CviKI_1 RGCY 4 cut(s) 71, 97, 176, 237
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 59
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 218
Eco81I CCTNAGG 1 cut(s) 59
FaeI CATG 1 cut(s) 357
FaiI YATR 4 cut(s) 40, 191, 318, 355
FaqI GGGAC 2 cut(s) 135, 231
FatI CATG 1 cut(s) 353
FauI CCCGC 1 cut(s) 55
Hin1II CATG 1 cut(s) 357
HinfI GANTC 3 cut(s) 26, 153, 280
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4V TGCA 4 cut(s) 4, 107, 133, 248
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 1 cut(s) 357
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 4 cut(s) 57, 74, 123, 159
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 4 cut(s) 54, 57, 314, 332
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 50
MvnI CGCG 1 cut(s) 50
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 357
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 153, 280
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PshAI GACNNNNGTC 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 135
SetI ASST 5 cut(s) 73, 99, 112, 178, 317
SfcI CTRYAG 1 cut(s) 284
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 1 cut(s) 218
Sse9I AATT 1 cut(s) 113
SsiI CCGC 3 cut(s) 48, 50, 221
TaaI ACNGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 332
TasI AATT 1 cut(s) 113
TfiI GAWTC 2 cut(s) 153, 280
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 1 cut(s) 293
VneI GTGCAC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.