Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3641015 .. 3642042

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCAGGGGTCCCACATCCTTAAAGTCCTCTGGGCCCTCCGTGTCTTCGTTTTCTCCAAGAAGCAGAAGAAGCAGATTTCAGAAGACGAAGAAACAAGGAGAAGCCAAAAGCCATCCGCGGTCTTACCCTTTGTTCCCGAGAAGATGAAATGCCATCTGCATTTTAAAACCGCGCTTTTTCTCAACGTCTTCTGCTTATGGACTAGCGTTTCTGGGGAGGCGCTGTTTTCTGAGAAGTCGATTTTGCTCGAGATCAAGAGCTCGGTTTCCGACCCGGATGGGGTTCTCTTCGGCTGGAGATCCAACAGCTTCGATCACCACTGTTCGTGGGTCGGTGTCTCATGCGACACCAAATCGAGGGTCGTTTCGCTCAGTCTCGGCGGCAGCGGTGCCAAAGGAGGTAATTTTCGAGCTCTGTCTTGCTCTCAGAGTCTGAAATTTCAATTCCCGTACGATGGGTTCGGTGTTTGGAGGAAAAGTTTGGTTAGTGGAAAATTGGGTGGAAAGGTTTCGCCTTGGGTGGGAAAGCTTAGTGAGCTTAGAGTTTTATCGCTGCCTTTCAATGAACTTAGTGGCGAAATTCCGAAGGAAATTTGGGGGTTGGAGAAGCTTGAAGTGATCGATCTTGAGGGGAATTTGTTAAACGGAAATTTGCCAACCCGGTTTTCGGGTTTGAGGACGTTGAGGGTATTGAATCTTGGGTTTAATAGAATTGGTGGGGAGATTCCTTTTTCGCTTTCGAAATGCGTGGGTTTGGAGGTGCTGAATTTGGTAGGTAATGAAGTGAGTGGAACCATCCCTGGGTTTGTTGGTAGGTTTGCAAAGTTGCGGGGGCTTTATTTGGCTCAAAATAGGTTAAATGGGTCTATACCAGCCACATTTGGAAGCTATTGTCGAAATCTTGAATATCTTGATCGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

308

Amino Acids

33.96

Weight (kDa)

9.53

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	77 - 116	1.2e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	174 - 300	2.8e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	389
AccII	CGCG	2 cut(s)	119, 173
AciI	CCGC	6 cut(s)	117, 119, 171, 381, 387, 829
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	6 cut(s)	437, 579, 591, 634, 649, 766
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	6 cut(s)	280, 357, 455, 521, 667, 801
AgsI	TTSAA	5 cut(s)	443, 562, 614, 694, 905
AjnI	CCWGG	1 cut(s)	799
AjuI	GAANNNNNNNTTGG	2 cut(s)	649, 681
AluBI	AGCT	7 cut(s)	261, 309, 413, 529, 538, 610, 888
AluI	AGCT	7 cut(s)	261, 309, 413, 529, 538, 610, 888
Alw21I	GWGCWC	2 cut(s)	263, 415
Alw26I	GTCTC	2 cut(s)	343, 380
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	433
Ama87I	CYCGRG	2 cut(s)	137, 248
AoxI	GGCC	1 cut(s)	33
ApaI	GGGCCC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	384, 553
ApoI	RAATTY	6 cut(s)	437, 579, 591, 634, 649, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp700I	GAANNNNTTC	1 cut(s)	508
AspLEI	GCGC	2 cut(s)	175, 223
AspS9I	GGNCC	3 cut(s)	9, 33, 34
AsuC2I	CCSGG	2 cut(s)	275, 661
AsuHPI	GGTGA	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	740
AvaI	CYCGRG	2 cut(s)	137, 248
AvaII	GGWCC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	3 cut(s)	37, 263, 415
BbsI	GAAGAC	3 cut(s)	37, 90, 181
Bbv12I	GWGCWC	2 cut(s)	263, 415
BbvI	GCAGC	2 cut(s)	396, 540
BccI	CCATC	5 cut(s)	121, 162, 272, 449, 803
BciT130I	CCWGG	1 cut(s)	801
BcnI	CCSGG	2 cut(s)	275, 661
BcoDI	GTCTC	2 cut(s)	343, 380
BfaI	CTAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	224
BisI	GCNGC	3 cut(s)	382, 385, 554
BlsI	GCNGC	3 cut(s)	383, 386, 555
Bme1390I	CCNGG	3 cut(s)	275, 661, 801
Bme18I	GGWCC	1 cut(s)	9
BmeT110I	CYCGRG	2 cut(s)	137, 248
BmgT120I	GGNCC	3 cut(s)	9, 33, 34
BmiI	GGNNCC	5 cut(s)	10, 11, 35, 391, 793
BmrFI	CCNGG	3 cut(s)	275, 661, 801
BpiI	GAAGAC	3 cut(s)	37, 90, 181
BpmI	CTGGAG	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	2 cut(s)	275, 661
Bsa29I	ATCGAT	2 cut(s)	621, 916
BsaJI	CCNNGG	4 cut(s)	117, 515, 799, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 463, 493
Bsc4I	CCNNNNNNNGG	6 cut(s)	280, 357, 455, 521, 667, 801
BseBI	CCWGG	1 cut(s)	801
BseCI	ATCGAT	2 cut(s)	621, 916
BseDI	CCNNGG	4 cut(s)	117, 515, 799, 800
BseGI	GGATG	4 cut(s)	15, 113, 283, 795
BseLI	CCNNNNNNNGG	6 cut(s)	280, 357, 455, 521, 667, 801
BseMII	CTCAG	3 cut(s)	222, 385, 440
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	396, 540
Bsh1236I	CGCG	2 cut(s)	119, 173
Bsh1285I	CGRYCG	1 cut(s)	920
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	389
BshVI	ATCGAT	2 cut(s)	621, 916
BsiEI	CGRYCG	1 cut(s)	920
BsiHKAI	GWGCWC	2 cut(s)	263, 415
BsiHKCI	CYCGRG	2 cut(s)	137, 248
BsiSI	CCGG	2 cut(s)	275, 661
BsiWI	CGTACG	1 cut(s)	450
BslI	CCNNNNNNNGG	6 cut(s)	280, 357, 455, 521, 667, 801
BsmAI	GTCTC	2 cut(s)	343, 380
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	2 cut(s)	137, 248
Bsp119I	TTCGAA	1 cut(s)	740
Bsp120I	GGGCCC	1 cut(s)	33
Bsp1286I	GDGCHC	3 cut(s)	37, 263, 415
Bsp143I	GATC	7 cut(s)	252, 299, 313, 618, 622, 913, 917
BspACI	CCGC	6 cut(s)	117, 119, 171, 381, 387, 829
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	3 cut(s)	223, 384, 439
BspDI	ATCGAT	2 cut(s)	621, 916
BspFNI	CGCG	2 cut(s)	119, 173
BspLI	GGNNCC	5 cut(s)	10, 11, 35, 391, 793
BspPI	GGATC	1 cut(s)	294
BspT104I	TTCGAA	1 cut(s)	740
BspT107I	GGYRCC	1 cut(s)	389
BssECI	CCNNGG	4 cut(s)	117, 515, 799, 800
BssMI	GATC	7 cut(s)	252, 299, 313, 618, 622, 913, 917
BssT1I	CCWWGG	1 cut(s)	515
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	740
BstDEI	CTNAG	6 cut(s)	231, 371, 426, 530, 539, 569
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	4 cut(s)	15, 113, 283, 795
BstFNI	CGCG	2 cut(s)	119, 173
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	175, 223
BstKTI	GATC	7 cut(s)	255, 302, 316, 621, 625, 916, 920
BstMAI	GTCTC	2 cut(s)	343, 380
BstMBI	GATC	7 cut(s)	252, 299, 313, 618, 622, 913, 917
BstMCI	CGRYCG	1 cut(s)	920
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 535
BstNI	CCWGG	1 cut(s)	801
BstSCI	CCNGG	3 cut(s)	273, 659, 799
BstSLI	GKGCMC	1 cut(s)	37
BstUI	CGCG	2 cut(s)	119, 173
BstV1I	GCAGC	2 cut(s)	396, 540
BstV2I	GAAGAC	3 cut(s)	37, 90, 181
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
Bsu15I	ATCGAT	2 cut(s)	621, 916
BsuRI	GGCC	1 cut(s)	35
BsuTUI	ATCGAT	2 cut(s)	621, 916
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	4 cut(s)	15, 113, 283, 795
BtsIMutI	CAGTG	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	2 cut(s)	175, 223
Cfr13I	GGNCC	3 cut(s)	9, 33, 34
Cfr42I	CCGCGG	1 cut(s)	120
ClaI	ATCGAT	2 cut(s)	621, 916
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	1 cut(s)	342
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	6 cut(s)	231, 371, 426, 530, 539, 569
DpnI	GATC	7 cut(s)	254, 301, 315, 620, 624, 915, 919
DpnII	GATC	7 cut(s)	252, 299, 313, 618, 622, 913, 917
DraI	TTTAAA	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	2 cut(s)	261, 413
Eco130I	CCWWGG	1 cut(s)	515
Eco24I	GRGCYC	3 cut(s)	37, 263, 415
Eco47I	GGWCC	1 cut(s)	9
Eco53kI	GAGCTC	2 cut(s)	261, 413
Eco88I	CYCGRG	2 cut(s)	137, 248
EcoICRI	GAGCTC	2 cut(s)	261, 413
EcoO109I	RGGNCCY	2 cut(s)	9, 34
EcoRII	CCWGG	1 cut(s)	799
EcoT14I	CCWWGG	1 cut(s)	515
EcoT38I	GRGCYC	3 cut(s)	37, 263, 415
ErhI	CCWWGG	1 cut(s)	515
FaeI	CATG	1 cut(s)	345
FaiI	YATR	3 cut(s)	199, 343, 869
FatI	CATG	1 cut(s)	341
FauI	CCCGC	1 cut(s)	822
Fnu4HI	GCNGC	3 cut(s)	382, 385, 554
FokI	GGATG	4 cut(s)	2, 100, 290, 782
FriOI	GRGCYC	3 cut(s)	37, 263, 415
Fsp4HI	GCNGC	3 cut(s)	382, 385, 554
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	174, 222
GluI	GCNGC	3 cut(s)	382, 385, 554
GsuI	CTGGAG	1 cut(s)	316
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	2 cut(s)	275, 661
HhaI	GCGC	2 cut(s)	175, 223
Hin1II	CATG	1 cut(s)	345
Hin6I	GCGC	2 cut(s)	173, 221
HinP1I	GCGC	2 cut(s)	173, 221
HindIII	AAGCTT	2 cut(s)	527, 608
HinfI	GANTC	3 cut(s)	430, 694, 724
HpaII	CCGG	2 cut(s)	275, 661
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	6 cut(s)	82, 232, 271, 429, 435, 585
Hpy188III	TCNNGA	7 cut(s)	137, 250, 256, 626, 902, 911, 921
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	2 cut(s)	186, 680
HpyCH4V	TGCA	3 cut(s)	4, 160, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 535
HpyF3I	CTNAG	6 cut(s)	231, 371, 426, 530, 539, 569
HpySE526I	ACGT	2 cut(s)	186, 680
Hsp92II	CATG	1 cut(s)	345
HspAI	GCGC	2 cut(s)	173, 221
KflI	GGGWCCC	1 cut(s)	9
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	7 cut(s)	252, 299, 313, 618, 622, 913, 917
LpnPI	CCDG	8 cut(s)	16, 198, 280, 288, 674, 786, 813, 885
Lsp1109I	GCAGC	2 cut(s)	396, 540
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	2 cut(s)	186, 680
MalI	GATC	7 cut(s)	254, 301, 315, 620, 624, 915, 919
MboI	GATC	7 cut(s)	252, 299, 313, 618, 622, 913, 917
MboII	GAAGA	7 cut(s)	37, 79, 95, 101, 154, 181, 280
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	3 cut(s)	37, 263, 415
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	3 cut(s)	294, 327, 582
MroXI	GAANNNNTTC	1 cut(s)	508
MseI	TTAA	5 cut(s)	21, 165, 641, 705, 857
MspA1I	CMGCKG	2 cut(s)	119, 387
MspI	CCGG	2 cut(s)	275, 661
MspR9I	CCNGG	3 cut(s)	275, 661, 801
MvaI	CCWGG	1 cut(s)	801
MvnI	CGCG	2 cut(s)	119, 173
MwoI	GCNNNNNNNGC	2 cut(s)	70, 535
NciI	CCSGG	2 cut(s)	275, 661
NdeII	GATC	7 cut(s)	252, 299, 313, 618, 622, 913, 917
NlaIII	CATG	1 cut(s)	345
NlaIV	GGNNCC	5 cut(s)	10, 11, 35, 391, 793
NmeAIII	GCCGAG	1 cut(s)	357
NspV	TTCGAA	1 cut(s)	740
PaeR7I	CTCGAG	1 cut(s)	248
PasI	CCCWGGG	1 cut(s)	800
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	694, 724
Pfl23II	CGTACG	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	383, 386, 555
Ple19I	CGATCG	1 cut(s)	920
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
PpuMI	RGGWCCY	1 cut(s)	9
Psp124BI	GAGCTC	2 cut(s)	263, 415
Psp5II	RGGWCCY	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	799
PspGI	CCWGG	1 cut(s)	799
PspLI	CGTACG	1 cut(s)	450
PspN4I	GGNNCC	5 cut(s)	10, 11, 35, 391, 793
PspOMI	GGGCCC	1 cut(s)	33
PspPI	GGNCC	3 cut(s)	9, 33, 34
PspPPI	RGGWCCY	1 cut(s)	9
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	299
PvuI	CGATCG	1 cut(s)	920
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SacI	GAGCTC	2 cut(s)	263, 415
SacII	CCGCGG	1 cut(s)	120
SaqAI	TTAA	5 cut(s)	21, 165, 641, 705, 857
SatI	GCNGC	3 cut(s)	382, 385, 554
Sau3AI	GATC	7 cut(s)	252, 299, 313, 618, 622, 913, 917
Sau96I	GGNCC	3 cut(s)	9, 33, 34
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	3 cut(s)	275, 661, 801
SduI	GDGCHC	3 cut(s)	37, 263, 415
Sfr274I	CTCGAG	1 cut(s)	248
Sfr303I	CCGCGG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	740
SgrBI	CCGCGG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	248, 626
SmoI	CTYRAG	2 cut(s)	248, 626
SsiI	CCGC	6 cut(s)	117, 119, 171, 381, 387, 829
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	2 cut(s)	263, 415
StyD4I	CCNGG	3 cut(s)	273, 659, 799
StyI	CCWWGG	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	2 cut(s)	189, 683
TaqI	TCGA	9 cut(s)	239, 249, 312, 356, 409, 621, 740, 895, 916
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	694, 724
Tru1I	TTAA	5 cut(s)	21, 165, 641, 705, 857
Tru9I	TTAA	5 cut(s)	21, 165, 641, 705, 857
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	2 cut(s)	384, 553
TspDTI	ATGAA	3 cut(s)	161, 579, 795
TspGWI	ACGGA	2 cut(s)	29, 660
TspRI	CASTG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	9
XapI	RAATTY	6 cut(s)	437, 579, 591, 634, 649, 766
XhoI	CTCGAG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.