Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3762595 .. 3765489

Gene Structure 2895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGACGACGACAACGAAAAACGACATCCACTAACCACGACCGAGTTCACGACTCAGTCCACCTGGACTCCCGACTCGGACAGCGCCTACTTCTTCAATACCCACGACAGAGACAACAACATACTCAGCGAGTTCGGCTGGATTTTCAACCCGGACGCCTCCAAACCCGATGACTGCTTCCCCTGCCTCGACCCCATCGCCGCCGCCGCCGACACGTCCGATTTGGCGGGAACTACTAGTAGTGGTCCTCTTGTTTTGGAGAACAACAGCAGCAGCAGCGCCGCCTTTGGGAGCCCCGACCCGGCCCCTGTTGTCGGATCCGCTTCGACCAATCCGTCAGCGTCTACGAGCTCCAGCGAGGATCCGCCTGAGAGGTCTACAGGCTCCGGTGGCAAACCACCGCCCGAGATACCGAGTAAGGTTAAAATGAAGGGGCCGAAGAGAATCCGGCAGCCACGATTCGCATTCATAACAAAGAGTGAAGGATTGATCATCTTGAGGATGGCTACCGTTGGCGGAAATATGGTCAGAAGGCTGTTAAAAATAGCCCCTTTCCAAGGAGCTATTATCGCTGCACAAATACCAAATGCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

199

Amino Acids

21.08

Weight (kDa)

5.18

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	334
AccI	GTMKAC	2 cut(s)	344, 377
AciI	CCGC	9 cut(s)	201, 204, 207, 227, 282, 321, 365, 401, 516
AclWI	GGATC	4 cut(s)	312, 325, 356, 369
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	4 cut(s)	288, 301, 314, 557
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	97, 148
AhlI	ACTAGT	1 cut(s)	236
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	2 cut(s)	351, 563
AluI	AGCT	2 cut(s)	351, 563
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	4 cut(s)	312, 325, 356, 369
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	303, 434
ApeKI	GCWGC	5 cut(s)	270, 273, 276, 451, 572
AspLEI	GCGC	2 cut(s)	86, 281
AspS9I	GGNCC	3 cut(s)	245, 304, 434
AsuC2I	CCSGG	2 cut(s)	152, 302
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	245
BamHI	GGATCC	2 cut(s)	317, 361
BanII	GRGCYC	2 cut(s)	296, 353
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	5 cut(s)	282, 285, 288, 463, 559
BccI	CCATC	2 cut(s)	203, 496
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	489
BcnI	CCSGG	2 cut(s)	152, 302
BcoDI	GTCTC	1 cut(s)	105
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	2 cut(s)	87, 282
BisI	GCNGC	9 cut(s)	201, 204, 207, 271, 274, 277, 282, 452, 573
BlsI	GCNGC	9 cut(s)	202, 205, 208, 272, 275, 278, 283, 453, 574
Bme1390I	CCNGG	3 cut(s)	64, 152, 302
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	404
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	3 cut(s)	245, 304, 434
BmiI	GGNNCC	6 cut(s)	293, 306, 319, 363, 385, 435
BmrFI	CCNGG	3 cut(s)	64, 152, 302
BpmI	CTGGAG	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	2 cut(s)	152, 302
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	556
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	4 cut(s)	288, 301, 314, 557
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	2 cut(s)	25, 507
BseLI	CCNNNNNNNGG	4 cut(s)	288, 301, 314, 557
BseMII	CTCAG	3 cut(s)	68, 139, 360
BseXI	GCAGC	5 cut(s)	282, 285, 288, 463, 559
BsgI	GTGCAG	1 cut(s)	558
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	305, 436
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	4 cut(s)	152, 302, 387, 448
BslI	CCNNNNNNNGG	4 cut(s)	288, 301, 314, 557
BsmAI	GTCTC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	305, 436
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	296, 353
Bsp143I	GATC	3 cut(s)	317, 361, 489
BspACI	CCGC	9 cut(s)	201, 204, 207, 227, 282, 321, 365, 401, 516
BspANI	GGCC	2 cut(s)	305, 436
BspCNI	CTCAG	3 cut(s)	67, 138, 361
BspLI	GGNNCC	6 cut(s)	293, 306, 319, 363, 385, 435
BspPI	GGATC	4 cut(s)	312, 325, 356, 369
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	3 cut(s)	317, 361, 489
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	511, 594
Bst6I	CTCTTC	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	54, 125, 369
BstENI	CCTNNNNNAGG	1 cut(s)	555
BstF5I	GGATG	2 cut(s)	25, 507
BstH2I	RGCGCY	2 cut(s)	87, 282
BstHHI	GCGC	2 cut(s)	86, 281
BstKTI	GATC	3 cut(s)	320, 364, 492
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	3 cut(s)	317, 361, 489
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	6 cut(s)	135, 183, 206, 276, 390, 569
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	3 cut(s)	62, 150, 300
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	282, 285, 288, 463, 559
BstX2I	RGATCY	2 cut(s)	317, 361
BstYI	RGATCY	2 cut(s)	317, 361
BsuRI	GGCC	2 cut(s)	305, 436
BtgZI	GCGATG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	25, 507
CfoI	GCGC	2 cut(s)	86, 281
Cfr13I	GGNCC	3 cut(s)	245, 304, 434
CseI	GACGC	2 cut(s)	164, 330
DdeI	CTNAG	3 cut(s)	54, 125, 369
DpnI	GATC	3 cut(s)	319, 363, 491
DpnII	GATC	3 cut(s)	317, 361, 489
DrdI	GACNNNNNNGTC	1 cut(s)	334
DseDI	GACNNNNNNGTC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
EciI	GGCGGA	2 cut(s)	354, 531
Ecl136II	GAGCTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	2 cut(s)	296, 353
Eco47I	GGWCC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	351
EcoNI	CCTNNNNNAGG	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	296, 353
ErhI	CCWWGG	1 cut(s)	556
FaiI	YATR	3 cut(s)	122, 470, 524
FauI	CCCGC	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	2 cut(s)	344, 377
Fnu4HI	GCNGC	9 cut(s)	201, 204, 207, 271, 274, 277, 282, 452, 573
FokI	GGATG	2 cut(s)	12, 514
FriOI	GRGCYC	2 cut(s)	296, 353
Fsp4HI	GCNGC	9 cut(s)	201, 204, 207, 271, 274, 277, 282, 452, 573
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	2 cut(s)	85, 280
GluI	GCNGC	9 cut(s)	201, 204, 207, 271, 274, 277, 282, 452, 573
GsuI	CTGGAG	1 cut(s)	337
HaeII	RGCGCY	2 cut(s)	87, 282
HaeIII	GGCC	2 cut(s)	305, 436
HapII	CCGG	4 cut(s)	152, 302, 387, 448
HgaI	GACGC	2 cut(s)	164, 330
HhaI	GCGC	2 cut(s)	86, 281
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	2 cut(s)	84, 279
HinP1I	GCGC	2 cut(s)	84, 279
HinfI	GANTC	5 cut(s)	52, 67, 74, 444, 459
HpaII	CCGG	4 cut(s)	152, 302, 387, 448
Hpy166II	GTNNAC	4 cut(s)	48, 60, 345, 378
Hpy188I	TCNGA	4 cut(s)	79, 220, 317, 530
Hpy188III	TCNNGA	3 cut(s)	49, 71, 496
Hpy8I	GTNNAC	4 cut(s)	48, 60, 345, 378
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	424, 476, 525
HpyCH4III	ACNGT	2 cut(s)	511, 594
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	575, 590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	135, 183, 206, 276, 390, 569
HpyF3I	CTNAG	3 cut(s)	54, 125, 369
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	2 cut(s)	84, 279
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	317, 361, 489
LmnI	GCTCC	4 cut(s)	291, 356, 389, 560
Lsp1109I	GCAGC	5 cut(s)	282, 285, 288, 463, 559
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	215
MalI	GATC	3 cut(s)	319, 363, 491
MboI	GATC	3 cut(s)	317, 361, 489
MboII	GAAGA	2 cut(s)	85, 451
MflI	RGATCY	2 cut(s)	317, 361
MhlI	GDGCHC	2 cut(s)	296, 353
MlyI	GAGTC	3 cut(s)	46, 61, 68
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	169, 197, 258, 352, 366, 492
MseI	TTAA	2 cut(s)	423, 539
MspI	CCGG	4 cut(s)	152, 302, 387, 448
MspR9I	CCNGG	3 cut(s)	64, 152, 302
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	6 cut(s)	135, 183, 206, 276, 390, 569
NciI	CCSGG	2 cut(s)	152, 302
NdeII	GATC	3 cut(s)	317, 361, 489
NlaIV	GGNNCC	6 cut(s)	293, 306, 319, 363, 385, 435
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 332
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	444, 459
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	9 cut(s)	202, 205, 208, 272, 275, 278, 283, 453, 574
PleI	GAGTC	3 cut(s)	46, 61, 68
PpsI	GAGTC	3 cut(s)	46, 61, 68
Psp124BI	GAGCTC	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	6 cut(s)	293, 306, 319, 363, 385, 435
PspPI	GGNCC	3 cut(s)	245, 304, 434
PsuI	RGATCY	2 cut(s)	317, 361
PsyI	GACNNNGTC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	423, 539
SatI	GCNGC	9 cut(s)	201, 204, 207, 271, 274, 277, 282, 452, 573
Sau3AI	GATC	3 cut(s)	317, 361, 489
Sau96I	GGNCC	3 cut(s)	245, 304, 434
SchI	GAGTC	3 cut(s)	46, 61, 68
ScrFI	CCNGG	3 cut(s)	64, 152, 302
SduI	GDGCHC	2 cut(s)	296, 353
SetI	ASST	6 cut(s)	65, 218, 353, 377, 423, 565
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
SpeI	ACTAGT	1 cut(s)	236
SsiI	CCGC	9 cut(s)	201, 204, 207, 227, 282, 321, 365, 401, 516
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	3 cut(s)	62, 150, 300
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	511, 594
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	189, 326
TaqII	GACCGA	1 cut(s)	56
TauI	GCSGC	4 cut(s)	203, 206, 209, 284
TfiI	GAWTC	2 cut(s)	444, 459
Tru1I	TTAA	2 cut(s)	423, 539
Tru9I	TTAA	2 cut(s)	423, 539
TseI	GCWGC	5 cut(s)	270, 273, 276, 451, 572
TspDTI	ATGAA	2 cut(s)	443, 457
TspGWI	ACGGA	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	555
XmiI	GTMKAC	2 cut(s)	344, 377
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.