Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4318668 .. 4319204

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTCCCGAGCATGAAGAAGCCCCGGAAGATGTGTTCCGGGGTTTTTATGGATGAAAAATTTTATGTTATTGGTGGCATTGGGGGAAGTGATTCGAAGGTTCTTACATGTGGCGAAGAATATGATTTAATGGCAAGAACATGGACAGAAATACCTAACATGTCTCCTGGACGGAGTGGTGCAGCCAGAGAGACTGATGTGCCTGCTGGTGAGGCACCACCTCTGGTTGCAGTGGTAAATAATGAATTGTATGCTGCTGACTATGCTGACATGGAGGTGAGGAAATATGATAAGGAGAGAAGAGTGTGGCTGACGGTGGGGAGATTGCCAGAGCGGGCAGCCTCAATGAATGGTTGGGGTCTTGCATTCAGGGCTTGTGGAGACCAGCTTATTGTTATTGGCGGGCCTAGGGCTCTGGGTGAAGGATTCATAGAGATCAATGCATGGGTTCCAGGTGAGGGTCCTCCACAATGGAACTTGCTTGCGAGGAAGCAATCGGGTAACTTTGTCTATAATTGTGCAGTGATGGGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0042579 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1

Protein Analysis

179

Amino Acids

19.47

Weight (kDa)

5.62

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_1	PF01344	8 - 55	1.2e-10	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	334
AciI	CCGC	2 cut(s)	334, 402
AcsI	RAATTY	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflIII	ACRYGT	2 cut(s)	107, 159
AjnI	CCWGG	2 cut(s)	166, 451
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	3 cut(s)	168, 185, 375
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	182, 254, 338
ApoI	RAATTY	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	91
AspA2I	CCTAGG	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	404, 461
AsuC2I	CCSGG	2 cut(s)	25, 40
AsuHPI	GGTGA	4 cut(s)	221, 289, 431, 467
AsuII	TTCGAA	1 cut(s)	95
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	461
AvrII	CCTAGG	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	415
BbvI	GCAGC	3 cut(s)	194, 241, 350
BccI	CCATC	1 cut(s)	520
BciT130I	CCWGG	2 cut(s)	168, 453
BcnI	CCSGG	2 cut(s)	25, 40
BcoDI	GTCTC	3 cut(s)	168, 185, 375
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	183, 255, 339
BlnI	CCTAGG	1 cut(s)	407
BlsI	GCNGC	3 cut(s)	184, 256, 340
Bme1390I	CCNGG	4 cut(s)	25, 40, 168, 453
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	404, 461
BmiI	GGNNCC	3 cut(s)	216, 450, 462
BmrFI	CCNGG	4 cut(s)	25, 40, 168, 453
BmsI	GCATC	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	25, 40
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	23, 39, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
BseBI	CCWGG	2 cut(s)	168, 453
BseDI	CCNNGG	3 cut(s)	23, 39, 407
BseGI	GGATG	2 cut(s)	58, 536
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseXI	GCAGC	3 cut(s)	194, 241, 350
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	406
BshNI	GGYRCC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	2 cut(s)	25, 39
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	3 cut(s)	168, 185, 375
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	406
Bso31I	GGTCTC	1 cut(s)	375
BsoBI	CYCGRG	1 cut(s)	7
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	435
BspACI	CCGC	2 cut(s)	334, 402
BspANI	GGCC	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	216, 450, 462
BspT104I	TTCGAA	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	334
BssECI	CCNNGG	3 cut(s)	23, 39, 407
BssMI	GATC	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	2 cut(s)	168, 453
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	204, 336, 404, 483
BstF5I	GGATG	2 cut(s)	58, 536
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	3 cut(s)	168, 185, 375
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 263, 371
BstNI	CCWGG	2 cut(s)	168, 453
BstNSI	RCATGY	2 cut(s)	111, 163
BstSCI	CCNGG	4 cut(s)	23, 38, 166, 451
BstV1I	GCAGC	3 cut(s)	194, 241, 350
BsuRI	GGCC	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	58, 536
BtsI	GCAGTG	2 cut(s)	237, 528
BtsIMutI	CAGTG	2 cut(s)	237, 528
Cac8I	GCNNGC	4 cut(s)	204, 336, 404, 483
Cfr13I	GGNCC	2 cut(s)	404, 461
CviAII	CATG	6 cut(s)	13, 108, 141, 160, 271, 444
CviJI	RGCY	8 cut(s)	22, 185, 310, 341, 374, 388, 406, 413
CviKI_1	RGCY	8 cut(s)	22, 185, 310, 341, 374, 388, 406, 413
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	415
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	166, 451
EcoT14I	CCWWGG	1 cut(s)	407
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	6 cut(s)	16, 111, 144, 163, 274, 447
FatI	CATG	6 cut(s)	12, 107, 140, 159, 270, 443
FauI	CCCGC	2 cut(s)	327, 395
Fnu4HI	GCNGC	3 cut(s)	183, 255, 339
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	3 cut(s)	183, 255, 339
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	3 cut(s)	183, 255, 339
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	2 cut(s)	25, 39
Hin1II	CATG	6 cut(s)	16, 111, 144, 163, 274, 447
HinfI	GANTC	2 cut(s)	92, 426
HpaII	CCGG	2 cut(s)	25, 39
HphI	GGTGA	4 cut(s)	221, 289, 431, 467
Hpy188III	TCNNGA	1 cut(s)	7
HpyAV	CCTTC	2 cut(s)	91, 416
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	182, 230, 365, 443, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 263, 371
Hsp92II	CATG	6 cut(s)	16, 111, 144, 163, 274, 447
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	3 cut(s)	194, 241, 350
LweI	GCATC	1 cut(s)	521
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	1 cut(s)	437
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	1 cut(s)	435
MboII	GAAGA	4 cut(s)	28, 40, 128, 312
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	3 cut(s)	59, 245, 514
MnlI	CCTC	8 cut(s)	205, 231, 268, 273, 352, 451, 474, 480
Mph1103I	ATGCAT	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	91
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	275
MspI	CCGG	2 cut(s)	25, 39
MspR9I	CCNGG	4 cut(s)	25, 40, 168, 453
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	2 cut(s)	168, 453
MwoI	GCNNNNNNNGC	3 cut(s)	212, 263, 371
NciI	CCSGG	2 cut(s)	25, 40
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	6 cut(s)	16, 111, 144, 163, 274, 447
NlaIV	GGNNCC	3 cut(s)	216, 450, 462
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	2 cut(s)	111, 163
NspV	TTCGAA	1 cut(s)	95
PciI	ACATGT	2 cut(s)	107, 159
PctI	GAATGC	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	92, 426
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	184, 256, 340
PpuMI	RGGWCCY	1 cut(s)	461
PscI	ACATGT	2 cut(s)	107, 159
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	166, 451
PspGI	CCWGG	2 cut(s)	166, 451
PspN4I	GGNNCC	3 cut(s)	216, 450, 462
PspPI	GGNCC	2 cut(s)	404, 461
PspPPI	RGGWCCY	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	3 cut(s)	183, 255, 339
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	2 cut(s)	404, 461
ScrFI	CCNGG	4 cut(s)	25, 40, 168, 453
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	6 cut(s)	102, 157, 223, 279, 390, 457
SfaNI	GCATC	1 cut(s)	521
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	59, 245, 514
SsiI	CCGC	2 cut(s)	334, 402
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	4 cut(s)	23, 38, 166, 451
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	59, 245, 514
TfiI	GAWTC	2 cut(s)	92, 426
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	2 cut(s)	237, 528
TseI	GCWGC	3 cut(s)	182, 254, 338
TspDTI	ATGAA	5 cut(s)	29, 69, 258, 362, 418
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	237, 528
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	2 cut(s)	111, 163
XmaJI	CCTAGG	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	91
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.