Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4705806 .. 4707934

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTGGTTGAACAGGCTGATTGGACGAACGAAGAAGGTGACCATAGACTGGCCATACCCTTTTGCAGAGGGAAAGCTGTTTGTTCTTACCTTGTTCTTGAGGATGCTACCGGACTCTCTGTAAATGGAGACATTGATGTGCACTCTGTGCTTGCAGCCTCCTTGCCCACATCACATCCTAGTTTTTCACCCCAGATGCACCTCGAAATGGTGACTAAGTGGAAAGCTCCATTTCTTCCCTACGGGCATGTAGAGTTGTTCATTGGCATTCTGTCCGCTGGGAACCATTTTGCAGAGCGTATGGCTGTGAGAAAGTCTTGGATGCAGCATAAATTAATCAAATCTTCGCGTGTTGTGGCTCGTTTTTTTGTAGCACTGCATGGAAGAAAGGAATGCGATGATGACACATTTATCAGGGTGGATGCTGTGCTCAAGGAAGCACGGAAAGTTCGTGGATATAAAAGCTTCTATATTGGAAATATGAACTACCACCACAAGCCTCTTCGCCATGGTAAATGGGCAGTGACGTATGAGGAATGGCCAGAAGAAGATTATCCACCCTATGCAAATGGTCCAGGATACATAATCTCCTCTGACATAGCAAAGTCCCTTGTATCCGAGTTTGAAAAGCACAAATTGCGATTGTTCAAGATGGAAGATGTGAGCATGGGAATGTGGGTAGAGCAATTCAACAAATCTAAACCGGTGGAGTATGTGCATAGCTGGAAGTTCTGCCAGTTTGGGTGCATCAACGACTATTACACCGCGCATTACCAATCTCCGAGACAAATGATATGCATGTGGGACAAATTGCAACAAGGGAAACCCCGGTGCTGCAATATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048519 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0070085 GO:0071554 GO:0071704 GO:1900055 GO:1900056 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905622 GO:1990714 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal-bind_lectin Galactosyl_T

Protein Analysis

283

Amino Acids

32.74

Weight (kDa)

8.52

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Galactosyl_T	PF01762	132 - 230	1.3e-13	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccII	CGCG	2 cut(s)	349, 767
AciI	CCGC	2 cut(s)	276, 765
AcoI	YGGCCR	2 cut(s)	51, 539
AdeI	CACNNNGTG	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	49, 208
AgeI	ACCGGT	1 cut(s)	703
AgsI	TTSAA	4 cut(s)	11, 626, 649, 691
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	4 cut(s)	77, 227, 465, 723
AluI	AGCT	4 cut(s)	77, 227, 465, 723
Alw21I	GWGCWC	2 cut(s)	144, 432
Alw26I	GTCTC	2 cut(s)	123, 778
Alw44I	GTGCAC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	51, 539
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	3 cut(s)	155, 325, 834
AseI	ATTAAT	1 cut(s)	335
AsiGI	ACCGGT	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	1 cut(s)	572
AsuC2I	CCSGG	1 cut(s)	829
AsuHPI	GGTGA	3 cut(s)	50, 180, 223
AvaII	GGWCC	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	144
BalI	TGGCCA	2 cut(s)	53, 541
Bbv12I	GWGCWC	2 cut(s)	144, 432
BbvI	GCAGC	3 cut(s)	167, 337, 821
BccI	CCATC	1 cut(s)	646
BciT130I	CCWGG	1 cut(s)	576
BciVI	GTATCC	2 cut(s)	572, 625
BcnI	CCSGG	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	123, 778
BfaI	CTAG	1 cut(s)	180
BfuI	GTATCC	2 cut(s)	572, 625
BisI	GCNGC	3 cut(s)	156, 326, 835
BlsI	GCNGC	3 cut(s)	157, 327, 836
Bme1390I	CCNGG	2 cut(s)	576, 829
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	576, 829
BmsI	GCATC	5 cut(s)	94, 186, 312, 412, 756
BpuEI	CTTGAG	2 cut(s)	119, 416
BpuMI	CCSGG	1 cut(s)	829
BsaJI	CCNNGG	2 cut(s)	508, 827
BsaWI	WCCGGW	2 cut(s)	110, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 208
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	2 cut(s)	54, 736
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	508, 827
BseGI	GGATG	4 cut(s)	109, 175, 327, 427
BseLI	CCNNNNNNNGG	2 cut(s)	49, 208
BseNI	ACTGG	2 cut(s)	54, 736
BseRI	GAGGAG	1 cut(s)	580
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	167, 337, 821
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	2 cut(s)	349, 767
BshFI	GGCC	2 cut(s)	53, 541
BshTI	ACCGGT	1 cut(s)	703
BsiHKAI	GWGCWC	2 cut(s)	144, 432
BsiSI	CCGG	3 cut(s)	111, 704, 829
BslFI	GGGAC	2 cut(s)	592, 818
BslI	CCNNNNNNNGG	2 cut(s)	49, 208
BsmAI	GTCTC	2 cut(s)	123, 778
BsmFI	GGGAC	2 cut(s)	592, 818
BsmI	GAATGC	2 cut(s)	267, 398
BsnI	GGCC	2 cut(s)	53, 541
Bsp1286I	GDGCHC	2 cut(s)	144, 432
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	2 cut(s)	276, 765
BspANI	GGCC	2 cut(s)	53, 541
BspFNI	CGCG	2 cut(s)	349, 767
BspLI	GGNNCC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	703
BsrI	ACTGG	2 cut(s)	54, 736
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	2 cut(s)	508, 827
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	576
Bst6I	CTCTTC	1 cut(s)	507
BstAPI	GCANNNNNTGC	2 cut(s)	148, 637
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	508
BstEII	GGTNACC	1 cut(s)	38
BstF5I	GGATG	4 cut(s)	109, 175, 327, 427
BstFNI	CGCG	2 cut(s)	349, 767
BstHHI	GCGC	1 cut(s)	769
BstMAI	GTCTC	2 cut(s)	123, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 637
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	2 cut(s)	251, 802
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	574, 827
BstSLI	GKGCMC	1 cut(s)	144
BstUI	CGCG	2 cut(s)	349, 767
BstV1I	GCAGC	3 cut(s)	167, 337, 821
BsuI	GTATCC	2 cut(s)	572, 625
BsuRI	GGCC	2 cut(s)	53, 541
BtgI	CCRYGG	1 cut(s)	508
BtgZI	GCGATG	1 cut(s)	411
BtsCI	GGATG	4 cut(s)	109, 175, 327, 427
BtsI	GCAGTG	2 cut(s)	374, 528
BtsIMutI	CAGTG	2 cut(s)	374, 528
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	769
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	1 cut(s)	572
CspAI	ACCGGT	1 cut(s)	703
CviAII	CATG	5 cut(s)	248, 380, 509, 667, 799
DdeI	CTNAG	1 cut(s)	216
DraIII	CACNNNGTG	1 cut(s)	148
EaeI	YGGCCR	2 cut(s)	51, 539
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	572
Eco91I	GGTNACC	1 cut(s)	38
EcoO65I	GGTNACC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	800
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	5 cut(s)	251, 383, 512, 670, 802
FaqI	GGGAC	2 cut(s)	592, 818
FatI	CATG	5 cut(s)	247, 379, 508, 666, 798
Fnu4HI	GCNGC	3 cut(s)	156, 326, 835
FokI	GGATG	4 cut(s)	116, 162, 334, 434
Fsp4HI	GCNGC	3 cut(s)	156, 326, 835
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	768
GluI	GCNGC	3 cut(s)	156, 326, 835
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	53, 541
HapII	CCGG	3 cut(s)	111, 704, 829
HhaI	GCGC	1 cut(s)	769
Hin1II	CATG	5 cut(s)	251, 383, 512, 670, 802
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	3 cut(s)	111, 704, 829
HphI	GGTGA	3 cut(s)	50, 180, 223
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	595, 619, 783
Hpy188III	TCNNGA	2 cut(s)	98, 649
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 637
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	5 cut(s)	251, 383, 512, 670, 802
HspAI	GCGC	1 cut(s)	767
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	3 cut(s)	167, 337, 821
LweI	GCATC	5 cut(s)	94, 186, 312, 412, 756
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	3 cut(s)	38, 211, 523
MboII	GAAGA	8 cut(s)	44, 227, 336, 396, 494, 557, 560, 668
MhlI	GDGCHC	2 cut(s)	144, 432
MlsI	TGGCCA	2 cut(s)	53, 541
MluCI	AATT	4 cut(s)	332, 635, 686, 809
MluNI	TGGCCA	2 cut(s)	53, 541
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	7 cut(s)	62, 94, 169, 212, 510, 526, 601
Mox20I	TGGCCA	2 cut(s)	53, 541
Mph1103I	ATGCAT	1 cut(s)	800
MscI	TGGCCA	2 cut(s)	53, 541
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	137, 671
Msp20I	TGGCCA	2 cut(s)	53, 541
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	3 cut(s)	111, 704, 829
MspR9I	CCNGG	2 cut(s)	576, 829
Mva1269I	GAATGC	2 cut(s)	267, 398
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	2 cut(s)	349, 767
MwoI	GCNNNNNNNGC	2 cut(s)	148, 637
NciI	CCSGG	1 cut(s)	829
NcoI	CCATGG	1 cut(s)	508
NlaIII	CATG	5 cut(s)	251, 383, 512, 670, 802
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	3 cut(s)	38, 211, 523
NsiI	ATGCAT	1 cut(s)	800
NspI	RCATGY	2 cut(s)	251, 802
PcsI	WCGNNNNNNNCGW	1 cut(s)	448
PctI	GAATGC	2 cut(s)	267, 398
PflMI	CCANNNNNTGG	1 cut(s)	49
PfoI	TCCNGGA	1 cut(s)	574
PinAI	ACCGGT	1 cut(s)	703
PkrI	GCNGC	3 cut(s)	157, 327, 836
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	574
PspEI	GGTNACC	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	572
RseI	CAYNNNNRTG	2 cut(s)	137, 671
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	3 cut(s)	156, 326, 835
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	576, 829
SduI	GDGCHC	2 cut(s)	144, 432
SetI	ASST	8 cut(s)	40, 79, 93, 204, 229, 467, 530, 725
SfaNI	GCATC	5 cut(s)	94, 186, 312, 412, 756
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	137, 671
SmlI	CTYRAG	2 cut(s)	98, 431
SmoI	CTYRAG	2 cut(s)	98, 431
Sse9I	AATT	4 cut(s)	332, 635, 686, 809
SsiI	CCGC	2 cut(s)	276, 765
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	574, 827
StyI	CCWWGG	1 cut(s)	508
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	204
TasI	AATT	4 cut(s)	332, 635, 686, 809
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	2 cut(s)	381, 528
TseFI	GTSAC	3 cut(s)	38, 211, 523
TseI	GCWGC	3 cut(s)	155, 325, 834
Tsp45I	GTSAC	3 cut(s)	38, 211, 523
TspDTI	ATGAA	2 cut(s)	250, 497
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	381, 528
Van91I	CCANNNNNTGG	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	572
VspI	ATTAAT	1 cut(s)	335
XceI	RCATGY	2 cut(s)	251, 802
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.