Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4759264 .. 4761980

Gene Structure 2717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTACCATTTTGAAAGCAATACCCCTGCCTTGGCTAGGACGTCAAATTTGAATGAAGAACTTGGACAGGTGGAATACATCTTTTCTGATAAAACTGGAACTCTAACACGAAACTTGATGGAGTTCTTTAAGTGTTCAATTGGAGGGGAGGTCTATGGAACTGGTATCACTGAAATTGAAAGGGGAATAGCAGAGCGGAATGGTATAAAACTTGTTGAGGGTTACAATTCAGGCAATGCAGCCCATGAGAAGGGATTCAACTTTGATGATCCTAAGCTTATGCGAGGAGGTTGGAGGAACGAGCCTAATCCTGATCTTTGTAAGGAATTCTTCAGATGCCTTGCTATATGTCACACAGTGCTTCCTGAGGGTGAAGAGTCCCCAGAAAAAATCACATATCAAGCTGCATCCCCTGATGAGTCTGCTTTGGTAATTGCTGCAAAGAACTTCGGCTTCTTCTTTCACAGACGTACACCAACGATGATATATGTTCGTGAATCTCACACTGAGAAAATTGGTACAGTTCAAGGTGTGTCTTACGAGATTCTCAATGTGCTTGAATTTAATAGTACAAGGAAGCGTCAGTCTGTTGTATGCCGTTACACAGATGGCAGGCTTGTTTTGTACTGCAAGGGTGCTGATAATGTAATCTACGAGAGATTGGCTGATGGACAAGATGATTTGAAAAAAGTATCTAGGGAACACTTGGAATTATTTGGATCTGCTGGATTACGTACTCTTTGCTTGGCCTATAGAGATTTAAGTCCTGATACATATGAAAGCTGGAATGAGAAGTTTATTCAGGCTAAATCCTCACTACGGGACCGTGAAAAGAAGTTGGATGAGGTGGCAGAAATCATAGAGAAAGATCGATCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0097708 GO:0098791 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

294

Amino Acids

33.41

Weight (kDa)

5.56

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	107 - 269	1.5e-16	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	196
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	2 cut(s)	263, 727
AcsI	RAATTY	3 cut(s)	46, 326, 560
AcuI	CTGAAG	1 cut(s)	316
AcyI	GRCGYC	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	6 cut(s)	5, 472, 520, 571, 626, 736
AfiI	CCNNNNNNNGG	4 cut(s)	31, 36, 250, 819
AgsI	TTSAA	8 cut(s)	14, 52, 138, 179, 259, 527, 560, 685
AluBI	AGCT	3 cut(s)	277, 404, 783
AluI	AGCT	3 cut(s)	277, 404, 783
AlwI	GGATC	2 cut(s)	263, 727
AoxI	GGCC	1 cut(s)	747
ApeKI	GCWGC	3 cut(s)	239, 404, 437
ApoI	RAATTY	3 cut(s)	46, 326, 560
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
Asp700I	GAANNNNTTC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	823
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	823
AxyI	CCTNAGG	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	251, 391, 424
BccI	CCATC	3 cut(s)	112, 602, 662
BceAI	ACGGC	1 cut(s)	582
BfaI	CTAG	2 cut(s)	36, 696
BfmI	CTRYAG	1 cut(s)	751
BisI	GCNGC	3 cut(s)	240, 405, 438
BlsI	GCNGC	3 cut(s)	241, 406, 439
Bme18I	GGWCC	1 cut(s)	823
BmgT120I	GGNCC	1 cut(s)	823
BmiI	GGNNCC	1 cut(s)	824
BmsI	GCATC	2 cut(s)	326, 416
Bpu10I	CCTNAGC	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	871
BsaAI	YACGTR	1 cut(s)	734
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 36, 250, 819
Bse1I	ACTGG	2 cut(s)	100, 166
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	241
BseCI	ATCGAT	1 cut(s)	871
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	407, 847
BseLI	CCNNNNNNNGG	4 cut(s)	31, 36, 250, 819
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	357, 498
BseNI	ACTGG	2 cut(s)	100, 166
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	251, 391, 424
BshFI	GGCC	1 cut(s)	749
BshVI	ATCGAT	1 cut(s)	871
BslFI	GGGAC	2 cut(s)	364, 836
BslI	CCNNNNNNNGG	4 cut(s)	31, 36, 250, 819
BsmFI	GGGAC	2 cut(s)	364, 836
BsnI	GGCC	1 cut(s)	749
Bsp143I	GATC	5 cut(s)	268, 313, 719, 868, 872
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	749
BspCNI	CTCAG	2 cut(s)	358, 499
BspDI	ATCGAT	1 cut(s)	871
BspLI	GGNNCC	1 cut(s)	824
BspPI	GGATC	2 cut(s)	263, 727
BsrBI	CCGCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	100, 166
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	5 cut(s)	268, 313, 719, 868, 872
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	358, 523, 827
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	614
BstDEI	CTNAG	3 cut(s)	273, 366, 507
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	407, 847
BstKTI	GATC	5 cut(s)	271, 316, 722, 871, 875
BstMBI	GATC	5 cut(s)	268, 313, 719, 868, 872
BstSFI	CTRYAG	1 cut(s)	751
BstSNI	TACGTA	1 cut(s)	734
BstV1I	GCAGC	3 cut(s)	251, 391, 424
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
Bsu15I	ATCGAT	1 cut(s)	871
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	749
BsuTUI	ATCGAT	1 cut(s)	871
BtsCI	GGATG	2 cut(s)	407, 847
BtsIMutI	CAGTG	3 cut(s)	168, 363, 504
Cac8I	GCNNGC	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	823
ClaI	ATCGAT	1 cut(s)	871
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	6 cut(s)	4, 471, 519, 570, 625, 735
CviAII	CATG	1 cut(s)	245
CviQI	GTAC	6 cut(s)	4, 471, 519, 570, 625, 735
DdeI	CTNAG	3 cut(s)	273, 366, 507
DpnI	GATC	5 cut(s)	270, 315, 721, 870, 874
DpnII	GATC	5 cut(s)	268, 313, 719, 868, 872
DraIII	CACNNNGTG	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco105I	TACGTA	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	316
Eco81I	CCTNAGG	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	248
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	2 cut(s)	364, 836
FatI	CATG	1 cut(s)	244
FauNDI	CATATG	1 cut(s)	775
Fnu4HI	GCNGC	3 cut(s)	240, 405, 438
FokI	GGATG	2 cut(s)	394, 854
Fsp4HI	GCNGC	3 cut(s)	240, 405, 438
FspBI	CTAG	2 cut(s)	36, 696
GluI	GCNGC	3 cut(s)	240, 405, 438
HaeIII	GGCC	1 cut(s)	749
HgaI	GACGC	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	5 cut(s)	255, 377, 419, 497, 544
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	2 cut(s)	88, 335
Hpy188III	TCNNGA	4 cut(s)	311, 365, 494, 767
Hpy8I	GTNNAC	1 cut(s)	473
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	3 cut(s)	358, 523, 827
HpyCH4IV	ACGT	3 cut(s)	41, 469, 733
HpyCH4V	TGCA	4 cut(s)	239, 407, 440, 630
HpyF3I	CTNAG	3 cut(s)	273, 366, 507
HpySE526I	ACGT	3 cut(s)	41, 469, 733
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	5 cut(s)	268, 313, 719, 868, 872
Lsp1109I	GCAGC	3 cut(s)	251, 391, 424
LweI	GCATC	2 cut(s)	326, 416
MaeI	CTAG	2 cut(s)	36, 696
MaeII	ACGT	3 cut(s)	41, 469, 733
MaeIII	GTNAC	3 cut(s)	221, 350, 599
MalI	GATC	5 cut(s)	270, 315, 721, 870, 874
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	5 cut(s)	268, 313, 719, 868, 872
MboII	GAAGA	4 cut(s)	68, 322, 386, 448
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	719
MluCI	AATT	9 cut(s)	46, 138, 174, 226, 326, 432, 513, 560, 710
MlyI	GAGTC	2 cut(s)	386, 428
MmeI	TCCRAC	2 cut(s)	272, 819
MnlI	CCTC	9 cut(s)	137, 142, 211, 278, 281, 288, 361, 823, 838
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	3 cut(s)	129, 564, 761
MunI	CAATTG	1 cut(s)	138
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	5 cut(s)	268, 313, 719, 868, 872
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	824
NmuCI	GTSAC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	3 cut(s)	255, 497, 544
PkrI	GCNGC	3 cut(s)	241, 406, 439
PleI	GAGTC	2 cut(s)	385, 427
PpsI	GAGTC	2 cut(s)	385, 427
Ppu21I	YACGTR	1 cut(s)	734
PspN4I	GGNNCC	1 cut(s)	824
PspPI	GGNCC	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	6 cut(s)	5, 472, 520, 571, 626, 736
RsaNI	GTAC	6 cut(s)	4, 471, 519, 570, 625, 735
SaqAI	TTAA	3 cut(s)	129, 564, 761
SatI	GCNGC	3 cut(s)	240, 405, 438
Sau3AI	GATC	5 cut(s)	268, 313, 719, 868, 872
Sau96I	GGNCC	1 cut(s)	823
SchI	GAGTC	2 cut(s)	386, 428
SfaNI	GCATC	2 cut(s)	326, 416
SfcI	CTRYAG	1 cut(s)	751
SinI	GGWCC	1 cut(s)	823
SnaBI	TACGTA	1 cut(s)	734
Sse9I	AATT	9 cut(s)	46, 138, 174, 226, 326, 432, 513, 560, 710
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	2 cut(s)	36, 696
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	3 cut(s)	358, 523, 827
TaiI	ACGT	3 cut(s)	44, 472, 736
TaqI	TCGA	1 cut(s)	871
TasI	AATT	9 cut(s)	46, 138, 174, 226, 326, 432, 513, 560, 710
TatI	WGTACW	2 cut(s)	569, 624
TfiI	GAWTC	3 cut(s)	255, 497, 544
Tru1I	TTAA	3 cut(s)	129, 564, 761
Tru9I	TTAA	3 cut(s)	129, 564, 761
TscAI	CASTG	3 cut(s)	175, 363, 511
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	3 cut(s)	239, 404, 437
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	69, 792
TspRI	CASTG	3 cut(s)	175, 363, 511
VpaK11BI	GGWCC	1 cut(s)	823
XagI	CCTNNNNNAGG	1 cut(s)	34
XapI	RAATTY	3 cut(s)	46, 326, 560
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	36, 696
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.